| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s30_337V6.1 |
| Family | GH16 |
| Protein Properties | Length: 355 Molecular Weight: 39152.3 Isoelectric Point: 5.3836 |
| Chromosome | Chromosome/Scaffold: 30 Start: 2342351 End: 2343415 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH16 | 25 | 260 | 1.1e-26 |
| MDDFSTPESLETKWRHPMGRRKWKWDAKSNKEIHWEPYCAQIVPDPDGGKSVLRVCVFSDWFHRIDRLATKETFGYGYYEARCRFQGAEGMHSAFWLLPD GMRDNPVPPGQIDGGIEIDVVEHRAKDGSSADVSSHGNTAVHWGGYGANHRSVAFKLMRLPDTPSEWATYGLLHEPGGLKWYWNGKEVNSARVWSPMPNG IYFSTEVNESGGWAGQDLSSYGPIDNPAGYIEVDYC | |||
| Full Sequence |
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| Protein Sequence Length: 355 Download |
| MATQTGMREP GLAPKTGQSW HNVFMDDFST PESLETKWRH PMGRRKWKWD AKSNKEIHWE 60 PYCAQIVPDP DGGKSVLRVC VFSDWFHRID RLATKETFGY GYYEARCRFQ GAEGMHSAFW 120 LLPDGMRDNP VPPGQIDGGI EIDVVEHRAK DGSSADVSSH GNTAVHWGGY GANHRSVAFK 180 LMRLPDTPSE WATYGLLHEP GGLKWYWNGK EVNSARVWSP MPNGIYFSTE VNESGGWAGQ 240 DLSSYGPIDN PAGYIEVDYC GFWQLSDYSS SSSTTTTSTT STSPLSVAVP SRHSATPRTS 300 STSDQCTPEI VSPPIPLRPE DAEFAAPENG TLTDGSPPLR PSKSPPDSRS LMDE* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd02178 | GH16_beta_agarase | 8.0e-8 | 93 | 264 | 182 | + Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold. | ||
| COG2273 | SKN1 | 8.0e-8 | 94 | 251 | 162 | + Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] | ||
| pfam00722 | Glyco_hydro_16 | 6.0e-11 | 91 | 261 | 176 | + Glycosyl hydrolases family 16. | ||
| cd08023 | GH16_laminarinase_like | 1.0e-15 | 91 | 259 | 183 | + Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans. | ||
| cd00413 | Glyco_hydrolase_16 | 1.0e-29 | 26 | 263 | 241 | + glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001756169.1 | 0 | 1 | 304 | 894 | 1203 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001757963.1 | 0 | 1 | 354 | 57 | 410 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_002135388.1 | 0.00000000000001 | 76 | 264 | 104 | 297 | glycoside hydrolase family 16 [Anaeromyxobacter sp. K] |
| RefSeq | YP_466157.1 | 0.000000000000002 | 46 | 264 | 65 | 282 | hypothetical protein Adeh_2950 [Anaeromyxobacter dehalogenans 2CP-C] |
| RefSeq | ZP_03128000.1 | 7e-16 | 10 | 278 | 32 | 294 | glycoside hydrolase family 16 [Chthoniobacter flavus Ellin428] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BJ946270 | 194 | 1 | 194 | 0 |
| DC936974 | 216 | 8 | 222 | 0 |
| BJ160780 | 173 | 1 | 173 | 0 |
| CN201099 | 176 | 88 | 263 | 0 |
| BY961120 | 161 | 1 | 161 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Physcomitrella patens | Pp1s21_68V6.2 | Pp1s58_31V6.2 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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