Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s341_66V6.1 |
Family | CE8 |
Protein Properties | Length: 375 Molecular Weight: 41048.4 Isoelectric Point: 7.7604 |
Chromosome | Chromosome/Scaffold: 341 Start: 397051 End: 398891 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 84 | 364 | 0 |
KKVSGAKYKKVKSAINSIPKGNSARCVVMIGEDFYKEKIKIPKEKPYVTIEGAGANKTVLSCHDYAGKVNSTYKSASFAVMSDYFIAKDVTFENSHPLPS GGEVGQQAVAFRIEGDKAQFYRVALLGAQDTLYDMAGRHYFKDCYIQGSIDFIFGSGQSYYETCHLHSIANPGSGSLTAQKRGTGVETSGFSFVRFCVTG NGPIYLGRAWGPYSRVVFLYTDIAAPIISAGWYNWNDPEREKTVYNAQYKCTGVEANTTGRAWWSKELTDAEAASFLSWDL |
Full Sequence |
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Protein Sequence Length: 375 Download |
MAIFRNSLLY IFVLVAGSFL VVSLQVDSAP DQSFNAWAVG ERAEYEAKQA ASPHLGIQDN 60 PDGDFNTAAK PTPVLESCLR IVGKKVSGAK YKKVKSAINS IPKGNSARCV VMIGEDFYKE 120 KIKIPKEKPY VTIEGAGANK TVLSCHDYAG KVNSTYKSAS FAVMSDYFIA KDVTFENSHP 180 LPSGGEVGQQ AVAFRIEGDK AQFYRVALLG AQDTLYDMAG RHYFKDCYIQ GSIDFIFGSG 240 QSYYETCHLH SIANPGSGSL TAQKRGTGVE TSGFSFVRFC VTGNGPIYLG RAWGPYSRVV 300 FLYTDIAAPI ISAGWYNWND PEREKTVYNA QYKCTGVEAN TTGRAWWSKE LTDAEAASFL 360 SWDLVDGKEW IGRV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 6.0e-76 | 98 | 371 | 274 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 8.0e-77 | 138 | 371 | 240 | + pectinesterase | ||
PLN02304 | PLN02304 | 2.0e-83 | 98 | 371 | 281 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-91 | 98 | 371 | 275 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 3.0e-117 | 98 | 371 | 280 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27989.1 | 0 | 82 | 371 | 17 | 311 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001777108.1 | 0 | 82 | 371 | 2 | 291 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778320.1 | 0 | 78 | 371 | 22 | 315 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001782802.1 | 0 | 81 | 371 | 1 | 291 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002330522.1 | 0 | 74 | 371 | 77 | 379 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.4013e-45 | 91 | 371 | 19 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-34 | 91 | 371 | 15 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-19 | 81 | 295 | 34 | 271 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-17 | 81 | 359 | 7 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-17 | 81 | 359 | 7 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |