Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s346_18V6.1 |
Family | GT41 |
Protein Properties | Length: 622 Molecular Weight: 69214.1 Isoelectric Point: 6.7779 |
Chromosome | Chromosome/Scaffold: 346 Start: 191860 End: 196223 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT41 | 60 | 548 | 0 |
IKPNFSQSLNNLGVVYTVQGKMDSAASMIEKAILANPSYAEAYNNLGVLHRDAGNIPLAIDAYERCLVIDPDSRNAGQNRLLAMNYIYEGDDDKLYNVHS DWGKRFSRLYPEFTTWSNSKDRDRVLTIGYISPDYFTHSVSYFIEAPLLHYDFTNFHLVVYSAVVKTDAKTQRFKDTVLKKGGVWREVYGIDEKKVANMV KEDKVDILVELTGHTANNRLGVMARRPAPIQITWIGYPNTTGLSTIDYRFTDALADPPNTTQKHVEELVRLPECFLCYTPSPETGPIVPSPALSNGFVTF GSFNNLAKITPRVLRVWARILIKVPTARLVVKCKPFCCDSVRDTFLSKLEELGVKSLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG VPCVTMAGKVHAHNVGVTLLHQVGLENLVVRTEDDYVDKAVQLASNTSSLAALRNGLREKMLKSYLCDGPKFVRGLEDTYRQLWHRYCD |
Full Sequence |
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Protein Sequence Length: 622 Download |
MTTEVAFSIT IISSQAVVMY ELALHFNPHC AEACNNLGVI YKDRDNLDKA VECYQMALQI 60 KPNFSQSLNN LGVVYTVQGK MDSAASMIEK AILANPSYAE AYNNLGVLHR DAGNIPLAID 120 AYERCLVIDP DSRNAGQNRL LAMNYIYEGD DDKLYNVHSD WGKRFSRLYP EFTTWSNSKD 180 RDRVLTIGYI SPDYFTHSVS YFIEAPLLHY DFTNFHLVVY SAVVKTDAKT QRFKDTVLKK 240 GGVWREVYGI DEKKVANMVK EDKVDILVEL TGHTANNRLG VMARRPAPIQ ITWIGYPNTT 300 GLSTIDYRFT DALADPPNTT QKHVEELVRL PECFLCYTPS PETGPIVPSP ALSNGFVTFG 360 SFNNLAKITP RVLRVWARIL IKVPTARLVV KCKPFCCDSV RDTFLSKLEE LGVKSLRVDL 420 LPLILLNHDH MQAYSLMDIS LDTFPYAGTT TTCESLYMGV PCVTMAGKVH AHNVGVTLLH 480 QVGLENLVVR TEDDYVDKAV QLASNTSSLA ALRNGLREKM LKSYLCDGPK FVRGLEDTYR 540 QLWHRYCDGD VPYETRKKAE NNALVSLSAS ADLSMEAVST PPQLNSAIVT PTPSPTSTLS 600 MTDGNTSSET RAKCQKLSPS S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00189 | TPR | 2.0e-14 | 66 | 153 | 88 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
cd00189 | TPR | 3.0e-17 | 14 | 92 | 79 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
cd00189 | TPR | 2.0e-23 | 32 | 131 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
COG3914 | Spy | 5.0e-99 | 13 | 546 | 555 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001782948.1 | 0.000000000004 | 5 | 152 | 173 | 324 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001782948.1 | 0 | 5 | 621 | 283 | 899 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001782948.1 | 0.0000000002 | 15 | 143 | 108 | 244 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001782948.1 | 0.0002 | 16 | 113 | 41 | 138 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4gz6_D | 6e-33 | 15 | 335 | 27 | 386 | A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis |
PDB | 4gz6_D | 4e-18 | 357 | 560 | 524 | 723 | A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis |
PDB | 4gz6_C | 6e-33 | 15 | 335 | 27 | 386 | A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis |
PDB | 4gz6_C | 4e-18 | 357 | 560 | 524 | 723 | A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis |
PDB | 4gz6_B | 6e-33 | 15 | 335 | 27 | 386 | A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781209 | 349 | 202 | 550 | 0 |
HO781209 | 118 | 90 | 207 | 0 |
DY295408 | 337 | 128 | 464 | 0 |
GO867600 | 327 | 18 | 344 | 0 |
GT041789 | 337 | 42 | 378 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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