Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s355_16V6.1 |
Family | PL1 |
Protein Properties | Length: 421 Molecular Weight: 46210.8 Isoelectric Point: 7.2817 |
Chromosome | Chromosome/Scaffold: 355 Start: 145101 End: 147419 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 143 | 343 | 0 |
WIIFSRNMNIKLKQELIMNSYKTLDGRGNNVHIAGGACLTLQYINNVIIHGIHIHDCQVTGPADVRSSPSHYGRRGKSDGDAVNIFGSRDIWVDHCYFSN SADGLVDVIQGSTDVTISNNYFENHDKVMLLGAHPNDSIDKGMRVTVAFNHFGANLIERMPRCRQGTFHVVNNNYQGWGMYAIGGSENPIINSEGNRFYA P |
Full Sequence |
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Protein Sequence Length: 421 Download |
MAAFTWRFAK AVIVVAFLWQ WEWQVCGAVR LLASGSSVKL QKAQLLDAFA DNSTTDSVLS 60 PNSNRRALSG CGNGNPVDDC WRCNPNWSKN RQQLADCALG FGRNAVGGKN GGIYVVTDDS 120 DDDVVNPKEG TLRYGVIQVE PLWIIFSRNM NIKLKQELIM NSYKTLDGRG NNVHIAGGAC 180 LTLQYINNVI IHGIHIHDCQ VTGPADVRSS PSHYGRRGKS DGDAVNIFGS RDIWVDHCYF 240 SNSADGLVDV IQGSTDVTIS NNYFENHDKV MLLGAHPNDS IDKGMRVTVA FNHFGANLIE 300 RMPRCRQGTF HVVNNNYQGW GMYAIGGSEN PIINSEGNRF YAPDARFKKQ VTKQIDDGHK 360 ENENSWNWRS SGDMFLNGAI FGEPGAQSAS TQFFAKATSF SARPAVMVQS MTNDAGPLAL 420 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-23 | 223 | 340 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-58 | 155 | 340 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-65 | 149 | 344 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001766376.1 | 0 | 1 | 420 | 1 | 427 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769269.1 | 0 | 71 | 420 | 1 | 348 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774203.1 | 0 | 62 | 420 | 1 | 359 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783165.1 | 0 | 66 | 420 | 10 | 364 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785953.1 | 0 | 59 | 420 | 30 | 384 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 75 | 416 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 75 | 416 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-19 | 144 | 340 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000003 | 153 | 318 | 120 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000001 | 100 | 340 | 22 | 287 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |