Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s35_24V6.1 |
Family | CE8 |
Protein Properties | Length: 378 Molecular Weight: 40837.4 Isoelectric Point: 4.4724 |
Chromosome | Chromosome/Scaffold: 35 Start: 126541 End: 128217 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 77 | 370 | 0 |
IVVDANGLGDFLSVQAAVDAVPAENPLRVVIRINAGNYEEKVQVPRTLPYLTFQGAGAATTSISWNNIASDVGPDGKQLGSFNSATVMVFASNFIARDIS FRNTAEVPPPGATGRQGAAFRIAGDKAAFYNCAFYGGQDTLCDDTGRHYFKNCYVQGSIDFVFGNGQSMYTGSTFHSIATSTGSIAAQDRDNPDDTSGFS FVGCQITGTGSNYLGRAMGKYSRIVYSECYIEDIILPQLWDTEWNHDGKNRDQTVTYGIYECWGPGVATSGQAWGNTMTQVEAIAFTSLEFIDG |
Full Sequence |
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Protein Sequence Length: 378 Download |
MKILIPADGG GGGGGGDLRC RKLAMTVLFS IFIFFQGRET EARIEPQEQG FTYRNLLQEN 60 PATDIPSSGS SMTLRQIVVD ANGLGDFLSV QAAVDAVPAE NPLRVVIRIN AGNYEEKVQV 120 PRTLPYLTFQ GAGAATTSIS WNNIASDVGP DGKQLGSFNS ATVMVFASNF IARDISFRNT 180 AEVPPPGATG RQGAAFRIAG DKAAFYNCAF YGGQDTLCDD TGRHYFKNCY VQGSIDFVFG 240 NGQSMYTGST FHSIATSTGS IAAQDRDNPD DTSGFSFVGC QITGTGSNYL GRAMGKYSRI 300 VYSECYIEDI ILPQLWDTEW NHDGKNRDQT VTYGIYECWG PGVATSGQAW GNTMTQVEAI 360 AFTSLEFIDG QEWLLEH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 4.0e-96 | 74 | 375 | 305 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 2.0e-97 | 64 | 374 | 320 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 3.0e-106 | 75 | 374 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-127 | 74 | 375 | 304 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 5.0e-131 | 75 | 374 | 301 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI31927.1 | 0 | 62 | 374 | 24 | 344 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001758971.1 | 0 | 72 | 377 | 1 | 306 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001782252.1 | 0 | 72 | 377 | 1 | 294 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002266321.1 | 0 | 62 | 374 | 31 | 351 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 75 | 374 | 14 | 312 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 70 | 374 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-31 | 78 | 374 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-18 | 78 | 246 | 34 | 212 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000001 | 87 | 246 | 18 | 185 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000001 | 87 | 246 | 18 | 185 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY273837 | 301 | 75 | 374 | 0 |
FC912864 | 281 | 75 | 354 | 0 |
FE517558 | 261 | 115 | 374 | 0 |
EX321231 | 289 | 75 | 362 | 0 |
EX427260 | 268 | 75 | 342 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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