Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s35_51V6.1 |
Family | CE8 |
Protein Properties | Length: 556 Molecular Weight: 58169.2 Isoelectric Point: 4.4341 |
Chromosome | Chromosome/Scaffold: 35 Start: 232891 End: 235719 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 250 | 547 | 0 |
YTSVQDAIDAVPENNTELYTIEIFSGTYLEKVSIPATKPFITLQGAGRNTTIISYNDTANSTNSTVKSSTFSVFAANFTARNVTFQASLSSLQCSNAAPH ASAGETGAQAVAMRVDGDMAAFYGCGFISSQDTICDEAGRHYFRDCYIEGNIDIIWGNGQSLYEYTQIQSTAIKNTGSITAQGRNSDNETTGFSFVGGSI TGTGKNILGRAYGLYSRVFFIDTYMEDIINPVGWSNWPTSNVSKGSRRLLDNSTVRHEQYGEYGNTGPGANLTGRVSWMLNLSEAEVANLTSLSFIDG |
Full Sequence |
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Protein Sequence Length: 556 Download |
MTENITRISN SKYVNRAVIV MVLICMMDRC HGQSWWSWGS SPPPPSALTD SSTAAAPSIS 60 SASAPVTSPS ISFPSFGAIP PSSSSADLLT SAPPSPSMSF SSFGAIPPSS SSADLFSAPP 120 SPSMSFSSFG AIPPSSSSAD LFSAPPSPSM SFSSFGATPP SSSSADLSTA APPSPTFSTI 180 TASPPSLSSW TSSPPSQSTP TSPATPPSPT FSVPSSPAPP PSTAPPPRPT NSTTLFVMST 240 SFSFGFETIY TSVQDAIDAV PENNTELYTI EIFSGTYLEK VSIPATKPFI TLQGAGRNTT 300 IISYNDTANS TNSTVKSSTF SVFAANFTAR NVTFQASLSS LQCSNAAPHA SAGETGAQAV 360 AMRVDGDMAA FYGCGFISSQ DTICDEAGRH YFRDCYIEGN IDIIWGNGQS LYEYTQIQST 420 AIKNTGSITA QGRNSDNETT GFSFVGGSIT GTGKNILGRA YGLYSRVFFI DTYMEDIINP 480 VGWSNWPTSN VSKGSRRLLD NSTVRHEQYG EYGNTGPGAN LTGRVSWMLN LSEAEVANLT 540 SLSFIDGTLW LSSET* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 8.0e-87 | 250 | 552 | 310 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-87 | 250 | 551 | 302 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-89 | 250 | 551 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 5.0e-92 | 250 | 553 | 313 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-103 | 250 | 551 | 308 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 250 | 552 | 92 | 378 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 250 | 552 | 26 | 312 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001758980.1 | 0 | 279 | 555 | 1 | 258 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769218.1 | 0 | 279 | 551 | 2 | 252 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769825.1 | 0 | 275 | 555 | 1 | 259 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2.00386e-43 | 250 | 555 | 19 | 312 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-30 | 250 | 553 | 15 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000000004 | 250 | 417 | 44 | 217 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000003 | 250 | 412 | 18 | 185 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000003 | 250 | 412 | 18 | 185 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DC958033 | 265 | 271 | 535 | 0 |
DC955236 | 234 | 323 | 556 | 0 |
DC952657 | 237 | 320 | 556 | 0 |
DC957093 | 226 | 331 | 556 | 0 |
DC949585 | 226 | 320 | 545 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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