Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s36_237V6.1 |
Family | GT47 |
Protein Properties | Length: 674 Molecular Weight: 75765.8 Isoelectric Point: 6.7563 |
Chromosome | Chromosome/Scaffold: 36 Start: 1582599 End: 1585288 |
Description | root hair specific 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 267 | 607 | 0 |
SCQGKYVYVYDLPPEFNVHLTERCDSMIPWFNLCDFFADSGIGKPVNSMDNGTQIFLPADRWFSTHQYALELVSHARIMKYKCRTEDPNLANLFYIPYYG GLDVIRWHFDLNATNTNRDALGWKLVRWLEKQPSWRRRGGLDHLLVLGKISWDFRRQLRGNWGSRLLEFPEIQNMMRVMIERNPWSKNDIGVPHPTYFHP KSASDIDTWLQHVKSQERTSLVAFVGKERRNDPTNVRSALVRQCRGASSEAVCRFVECKKDLCQHPVFVTKTFVTSQFCMQPVGDSPTRRSVFDSLIAGC IPVLFHPATAYLQYAWHLPRNESSWSVYISEDEVREGRVNA |
Full Sequence |
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Protein Sequence Length: 674 Download |
MVCSSISIVI VRLKCTIPGV LVLDVMDRKM GDKYTTRSGI AKGPLSTARL KILVPFCLMV 60 FVAWNSSSMV PFGRSSSGPT YGMPVPEYES LGVNTMQRHK KSSGALDGLV DVGLARFHPR 120 TDVVTNQFDI SMTFKPTSQV HDEPNSVHPS INNGAQFKIE ITSDEEDKVV IAQSKYDEGG 180 REHDSTQSKD CRKEDSGAIA QHGADGNAQT TAESNQPDRN EGSSVAPDTI TGNLSSPVNI 240 AAMEIFDEIR SRSLPYATTI SERSEDSCQG KYVYVYDLPP EFNVHLTERC DSMIPWFNLC 300 DFFADSGIGK PVNSMDNGTQ IFLPADRWFS THQYALELVS HARIMKYKCR TEDPNLANLF 360 YIPYYGGLDV IRWHFDLNAT NTNRDALGWK LVRWLEKQPS WRRRGGLDHL LVLGKISWDF 420 RRQLRGNWGS RLLEFPEIQN MMRVMIERNP WSKNDIGVPH PTYFHPKSAS DIDTWLQHVK 480 SQERTSLVAF VGKERRNDPT NVRSALVRQC RGASSEAVCR FVECKKDLCQ HPVFVTKTFV 540 TSQFCMQPVG DSPTRRSVFD SLIAGCIPVL FHPATAYLQY AWHLPRNESS WSVYISEDEV 600 REGRVNAVDV LKKISTAEMD AMRETILNTV IPGLLYSAPG SDVSPYKDAF DITIEQLLHH 660 TAHLPDSEEF AKV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-53 | 267 | 600 | 349 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001756054.1 | 0 | 267 | 666 | 1 | 400 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001757088.1 | 0 | 243 | 666 | 1 | 424 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001759310.1 | 0 | 267 | 658 | 1 | 392 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778302.1 | 0 | 242 | 658 | 3 | 410 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002509789.1 | 0 | 260 | 664 | 174 | 566 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC357955 | 266 | 136 | 401 | 0 |
FC340904 | 252 | 263 | 514 | 0 |
FC346433 | 255 | 360 | 614 | 0 |
FC326980 | 248 | 192 | 439 | 0 |
FC326980 | 27 | 440 | 466 | 0.00000000000003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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