| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s375_23V6.1 |
| Family | GH28 |
| Protein Properties | Length: 499 Molecular Weight: 55441 Isoelectric Point: 6.2693 |
| Chromosome | Chromosome/Scaffold: 375 Start: 127577 End: 129342 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 95 | 424 | 0 |
| DYCANQGGGVVYVSPGENLTGTLYLKSNITLWVDKGATIVGSARQEDFLAHWTRWYTILAEDAENVELTGGGIVTGQGLKFVVEFKEEKNIMVSWNVTGD CVGDECRPRLVGFINCKNVHIWNVFLREPAYWCLHIVKSNIISIHDVSMHGDFNSPNTDGIDIDSSNNTVIKDCHIDTGDDAICSKSELGPLYNLTVTNC WIRTKSCAVKLGSMTNFNLGNLHFEQLVIVDSHRGLGIQLRDSGNINNVTYANIQMSTRYYHPSWWGLAEPIYVSACPRTPDTVLGSVNNVHYMNITTTS ENGIFLSGLEESFLKGLHFRNVKMTLARST | |||
| Full Sequence |
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| Protein Sequence Length: 499 Download |
| MGLKLGLSSV VSRMGSLDGR KSCKLVFRLL ITLFVGILMK NSFSLAASLP FEIRPSFQAL 60 KAEFEDGRFV CRVSDFGATG NGEVYDTSAI QSSIDYCANQ GGGVVYVSPG ENLTGTLYLK 120 SNITLWVDKG ATIVGSARQE DFLAHWTRWY TILAEDAENV ELTGGGIVTG QGLKFVVEFK 180 EEKNIMVSWN VTGDCVGDEC RPRLVGFINC KNVHIWNVFL REPAYWCLHI VKSNIISIHD 240 VSMHGDFNSP NTDGIDIDSS NNTVIKDCHI DTGDDAICSK SELGPLYNLT VTNCWIRTKS 300 CAVKLGSMTN FNLGNLHFEQ LVIVDSHRGL GIQLRDSGNI NNVTYANIQM STRYYHPSWW 360 GLAEPIYVSA CPRTPDTVLG SVNNVHYMNI TTTSENGIFL SGLEESFLKG LHFRNVKMTL 420 ARSTNFTGGY HDYRPGCQGL VTHRMSGLFM EYVKDIWMQE VFVQWKGSNV SDWGLPIDFT 480 PSTVGNMHLM NYENTYTV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-11 | 73 | 277 | 216 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-11 | 152 | 424 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 7.0e-13 | 73 | 281 | 218 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-15 | 73 | 424 | 389 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 5.0e-49 | 29 | 351 | 368 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001769606.1 | 0 | 73 | 483 | 1 | 411 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001783745.1 | 0 | 39 | 498 | 1 | 460 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002282920.1 | 0 | 73 | 494 | 41 | 464 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 73 | 493 | 15 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002462564.1 | 0 | 70 | 494 | 32 | 458 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-22 | 75 | 471 | 32 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-22 | 75 | 471 | 32 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-22 | 75 | 471 | 32 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-22 | 75 | 471 | 32 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00000000000001 | 37 | 350 | 110 | 487 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FC371861 | 223 | 277 | 499 | 0 |
| DC951894 | 215 | 285 | 499 | 0 |
| FC371860 | 202 | 298 | 499 | 0 |
| DY982615 | 296 | 148 | 443 | 0 |
| DC951894 | 22 | 262 | 283 | 0.011 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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