| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s37_38V6.2 |
| Family | PL1 |
| Protein Properties | Length: 365 Molecular Weight: 40200.5 Isoelectric Point: 8.1796 |
| Chromosome | Chromosome/Scaffold: 37 Start: 229990 End: 232932 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 95 | 273 | 0 |
| VFDVSGTITLSSYCRVRSWKTIDGRGQCIRITGKGLQLKDCEHVIICNLILDGGRGHDIDGIQMKPNVKHVWVDRCSISDFDDGCIDITRASTDITVSRC HFSNHDKTMLIGADPKHVDDRCIRVTIHHCFFDGTKQRHPRLRFGKVHLYNNYTRGWTVYAICASVEAQILSQCCIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 365 Download |
| MCRLCGLGRR RPSNPFPAPP SKPQDQNASG AATMEVGPYT KVDTHLRGLA HAAEGFGHSA 60 KGGLDGEIYH VTSLADDGPG TLRNGCRSEQ PLWIVFDVSG TITLSSYCRV RSWKTIDGRG 120 QCIRITGKGL QLKDCEHVII CNLILDGGRG HDIDGIQMKP NVKHVWVDRC SISDFDDGCI 180 DITRASTDIT VSRCHFSNHD KTMLIGADPK HVDDRCIRVT IHHCFFDGTK QRHPRLRFGK 240 VHLYNNYTRG WTVYAICASV EAQILSQCCI YEAGSKLKAF EYYPEKAGDT GYESAGSIRS 300 EGDVFLKGAQ GRVDNPDQVF QPQKFYSSWT LEGANDALMK KVKSIAGWQK ILRPPDVTPA 360 HSSS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 8.0e-37 | 90 | 267 | 198 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 1.0e-39 | 62 | 292 | 250 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 6.0e-59 | 94 | 275 | 194 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABR16354.1 | 0 | 35 | 357 | 60 | 382 | unknown [Picea sitchensis] |
| GenBank | ACN25563.1 | 0 | 20 | 356 | 27 | 364 | unknown [Zea mays] |
| EMBL | CBI32661.1 | 0 | 34 | 356 | 1 | 324 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_001759359.1 | 0 | 34 | 364 | 1 | 331 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002277576.1 | 0 | 3 | 356 | 7 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 6.00036e-42 | 43 | 309 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 6.00036e-42 | 43 | 309 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 7e-26 | 62 | 264 | 23 | 239 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 4e-21 | 108 | 271 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 3e-19 | 115 | 272 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FC333084 | 261 | 24 | 284 | 0 |
| FC433857 | 278 | 4 | 281 | 0 |
| DC927335 | 244 | 122 | 365 | 0 |
| BY948419 | 259 | 4 | 262 | 0 |
| FC433857 | 31 | 276 | 306 | 0.0000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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