y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s385_14V6.1 |
Family | PL1 |
Protein Properties | Length: 483 Molecular Weight: 52809.2 Isoelectric Point: 7.2684 |
Chromosome | Chromosome/Scaffold: 385 Start: 136421 End: 137975 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 200 | 399 | 0 |
IVFASSMIIKLKNELLITSFKTIDARGVQVRIAGGGGLRIHKVSNVIVHGLFIHDIKATGPAKIMKSEKNVENRPRCDGDAISIFSSSNIWIDHCYLSNA ADGLIDVIRGSNSISITNCYFTRHNKVMLLGGDASHTMDRNMHVTVAYNKFGPGLVQRMPRIRYGNLHLVNNEYSSGWGVYPVGGSQNPTILSQGNVYNA |
Full Sequence |
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Protein Sequence Length: 483 Download |
MARLALFLWI LPSLVCVHLR QAHAQTGYTE LLSSTTGRDY DYHDVMASLA DADQTTASIS 60 NVLSESGQPN YEQDVDATDD AYLQEGEAGG NDPNEDGFDM VEMDDDGESS SEEDTDKSVS 120 PEPSRGCQTG NLVDDSWRCD PNWASRRKNL ASCAIGFGRK AIGGKNGAIY VVTSPRDDNP 180 ANPAPGTLRY AVTRKQPLWI VFASSMIIKL KNELLITSFK TIDARGVQVR IAGGGGLRIH 240 KVSNVIVHGL FIHDIKATGP AKIMKSEKNV ENRPRCDGDA ISIFSSSNIW IDHCYLSNAA 300 DGLIDVIRGS NSISITNCYF TRHNKVMLLG GDASHTMDRN MHVTVAYNKF GPGLVQRMPR 360 IRYGNLHLVN NEYSSGWGVY PVGGSQNPTI LSQGNVYNAN RGNKEVTKRI DDGGPKFGGP 420 RTWNWRSEGD MFQSGAYFGN VPMSWSAQSY SQTVSCKSRP ASMVWKMVRD AGPLNCRKGA 480 RC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.006 | 232 | 340 | 118 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 4.0e-28 | 163 | 397 | 247 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-53 | 211 | 397 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-61 | 206 | 397 | 203 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001757625.1 | 0 | 127 | 482 | 2 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767336.1 | 0 | 133 | 482 | 2 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767377.1 | 0 | 124 | 482 | 7 | 365 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783970.1 | 0 | 103 | 482 | 1 | 380 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784519.1 | 0 | 127 | 482 | 17 | 372 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 131 | 472 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 131 | 472 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-18 | 162 | 397 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000002 | 214 | 374 | 128 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000002 | 209 | 456 | 71 | 344 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |