y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s38_153V6.1 |
Family | GT5 |
Protein Properties | Length: 847 Molecular Weight: 95234.6 Isoelectric Point: 6.928 |
Chromosome | Chromosome/Scaffold: 38 Start: 878664 End: 886035 |
Description | starch synthase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 356 | 842 | 0 |
HVIHIAAEIAPVAKVGGLGDVLTGLCRSLQKKGHLVEAILPKYDCMDYSRIINLRELDLELPSFFDGHMHKNKVWSGIVEGIPVYFIEPLHPAKFFRRGE YYAEPDDFRRFTYFSRAAMEFILQSGKRPDIIHSHDWQTSVVAPLYWNVYVPLGLDSARLAFTCHNFLYQGIENSEAIAACGLTVQDLMSPDQMQDNFFH NKINLLKGAIVFSNVVTTVSPTYAQEVLSPEGGKGLHGTLGAHSKKFFGILNGIDVEVWNPATDTLIDYQFTADNIDGKFVNKQKLRERLGLGNQGGDER RPLVGCVTRLAPQKGVHLIKHAIHRTLEKGGQFILLGSSNLPEVQHEFEVIARQFENHPQIRLVLKYDETLSHAIYSAADVFVIPSIFEPCGLTQMISMR YGTIPVVRRTGGLADSVFDVDDERIPQEKKNGFVFDDANEGSFNSGLDRALNYYIQRPEWWQDLVRKAMLVDFSWDSSADRYVDLYR |
Full Sequence |
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Protein Sequence Length: 847 Download |
MSTTVALGIG SITTFVRVFP HNFFSFGQMK HGCRVSLEDA ATVSRCGSFR FLFTPLSTTC 60 GIRSRNSSSK RDQVKRMRGR QSRSEVNNRM GRHGRDGPTT VQDIQKLATA AEESLPLGDG 120 GGLCFLESSA PNGASNVEDE EKGGNGAFSG IPAEVVFVFG GCAISEVRCR SLNPRLLLLK 180 KVLGSFVYDF LQYLIFSICD FVKADSLKSL LAQAIIEKNA ISKERSENIR LHERVEPLKE 240 RLRESDTKIL AQLRTYREDV EASQASIHEL TSENESSVAQ IPVQEMPWDS WRGLLLRIDA 300 LSDFLSQKVT KELQSVAWRR EKRLRDIYVS FADEADEELV SEFMNLLQPK KRPGLHVIHI 360 AAEIAPVAKV GGLGDVLTGL CRSLQKKGHL VEAILPKYDC MDYSRIINLR ELDLELPSFF 420 DGHMHKNKVW SGIVEGIPVY FIEPLHPAKF FRRGEYYAEP DDFRRFTYFS RAAMEFILQS 480 GKRPDIIHSH DWQTSVVAPL YWNVYVPLGL DSARLAFTCH NFLYQGIENS EAIAACGLTV 540 QDLMSPDQMQ DNFFHNKINL LKGAIVFSNV VTTVSPTYAQ EVLSPEGGKG LHGTLGAHSK 600 KFFGILNGID VEVWNPATDT LIDYQFTADN IDGKFVNKQK LRERLGLGNQ GGDERRPLVG 660 CVTRLAPQKG VHLIKHAIHR TLEKGGQFIL LGSSNLPEVQ HEFEVIARQF ENHPQIRLVL 720 KYDETLSHAI YSAADVFVIP SIFEPCGLTQ MISMRYGTIP VVRRTGGLAD SVFDVDDERI 780 PQEKKNGFVF DDANEGSFNS GLDRALNYYI QRPEWWQDLV RKAMLVDFSW DSSADRYVDL 840 YRLVLK* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 1.0e-145 | 351 | 846 | 503 | + synthase/transferase | ||
PLN02939 | PLN02939 | 0 | 203 | 841 | 644 | + transferase, transferring glycosyl groups | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 356 | 842 | 491 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 355 | 842 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 0 | 355 | 846 | 497 | + glycogen synthase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB40375.1 | 0 | 249 | 841 | 269 | 861 | starch synthase, isoform V [Vigna unguiculata] |
RefSeq | NP_193558.3 | 0 | 203 | 841 | 388 | 1026 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_001751723.1 | 0 | 203 | 845 | 186 | 830 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001756311.1 | 0 | 249 | 846 | 26 | 663 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001759580.1 | 0 | 203 | 846 | 1 | 644 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 355 | 841 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 355 | 841 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 355 | 841 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 355 | 841 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 355 | 841 | 1 | 473 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO851132 | 335 | 430 | 764 | 0 |
CF828776 | 288 | 480 | 767 | 0 |
FE428048 | 277 | 346 | 622 | 0 |
GW865616 | 300 | 461 | 760 | 0 |
CB893818 | 281 | 354 | 634 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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