Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s3_508V6.1 |
Family | CE8 |
Protein Properties | Length: 387 Molecular Weight: 43132 Isoelectric Point: 6.3471 |
Chromosome | Chromosome/Scaffold: 3 Start: 3000456 End: 3003265 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 91 | 378 | 0 |
SVGKQGNVDFNTVQEAIDAIPENNAVWVEISIRAGVYREKVFIPSNKPFVILQGEGRSTTTIAHRQSASQSGTANSATVTVYSSNFIARGIGFQNDAPLA EPGQVDGQAVAVLLVTDKAAFYSCGFYGGQDTLFDFSGRHYFKECYFEGNIDIISGNGQSVFKNCEIHEIATQAYISGSLTAQKRSSPDENTGFVFINCL ITGIGTGQVFLGRAWGPYSRVVYIYTYMDDVILPEGWQDWSNPSRERTVYYGQYQCSGPGSDASQRVKWSHELSDGEAQNFLQLSWID |
Full Sequence |
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Protein Sequence Length: 387 Download |
MARPWNSKFL LLLRLLLFFQ KLCNTQGRSY GWESAYARTQ PVRFEPLEDA EEGASGSRFW 60 ANPDHGHHHK YGHPTHFKRT RALPSNTNYI SVGKQGNVDF NTVQEAIDAI PENNAVWVEI 120 SIRAGVYREK VFIPSNKPFV ILQGEGRSTT TIAHRQSASQ SGTANSATVT VYSSNFIARG 180 IGFQNDAPLA EPGQVDGQAV AVLLVTDKAA FYSCGFYGGQ DTLFDFSGRH YFKECYFEGN 240 IDIISGNGQS VFKNCEIHEI ATQAYISGSL TAQKRSSPDE NTGFVFINCL ITGIGTGQVF 300 LGRAWGPYSR VVYIYTYMDD VILPEGWQDW SNPSRERTVY YGQYQCSGPG SDASQRVKWS 360 HELSDGEAQN FLQLSWIDGQ AWLQEV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-105 | 90 | 384 | 295 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 9.0e-106 | 90 | 383 | 295 | + Probable pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-107 | 90 | 383 | 294 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 7.0e-111 | 87 | 384 | 308 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 9.0e-128 | 77 | 384 | 317 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 99 | 384 | 91 | 378 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 79 | 384 | 6 | 312 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001752210.1 | 0 | 1 | 386 | 1 | 386 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769270.1 | 0 | 72 | 384 | 70 | 371 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002330522.1 | 0 | 5 | 384 | 6 | 380 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 90 | 384 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2.00386e-43 | 92 | 384 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-23 | 90 | 351 | 35 | 335 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 8e-21 | 87 | 373 | 2 | 330 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 8e-21 | 87 | 373 | 2 | 330 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |