y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s404_28V6.1 |
Family | GT5 |
Protein Properties | Length: 643 Molecular Weight: 70144.5 Isoelectric Point: 5.8598 |
Chromosome | Chromosome/Scaffold: 404 Start: 246225 End: 248578 |
Description | Glycogen/starch synthases, ADP-glucose type |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 134 | 632 | 0 |
NVVFVSAEVAPYSKTGGLGDVCGSLPIALAQRGHRVMVVAPRYMNGVTDAMYEGAFDCQCRIPVACFGATHEVAFFHEFRAGVDWVFVDHPSYHRQGTPY GDTRGAFGDNQFRFTLLCHAACEAPLVLALGGYTYGEKCVFVANDWHASLVPVLLASKYRRHGVYVNSRCILAIHNLAHQGVEPATTFSNLGIPLEWYGA LEWVFPEWARLHALDKGEAVNHLKGAVVTSDRILTVSQGYAWEITTPEGGCGLDKLLGSRAAVINGITNGVDVDDWSPSVDRHLPATFTVGDMAGKAECK AALQRELGLPVRPEVPLIGFIGRLDYQKGPDIVQEGLPELMTDDIQVVMLGSGDTEMEKWMKWAETQYREKFRGWVGFSVPVAHRITAGCDILLMPSRFE PCGLNQLYAMRYGTIPVAHATGGLRDTIENYNPDANNGEGSGTGWIFSPLSKDAMVNSLWGAIFAYRNDKEGWARMQERGMEKDVSWTRSALQYEQVFE |
Full Sequence |
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Protein Sequence Length: 643 Download |
MAAVQLTSCC GRGVASTGVA SSHKRTEEGI GSGLRGNWVS TSRISRALSL KTSAIEVLVV 60 QVTPLKAVSS SSSSRNGVWC SAVESSIGAW PQTPAPENTL TFSADPSERN QEQEQMLKDL 120 ADSDETKRAK TLLNVVFVSA EVAPYSKTGG LGDVCGSLPI ALAQRGHRVM VVAPRYMNGV 180 TDAMYEGAFD CQCRIPVACF GATHEVAFFH EFRAGVDWVF VDHPSYHRQG TPYGDTRGAF 240 GDNQFRFTLL CHAACEAPLV LALGGYTYGE KCVFVANDWH ASLVPVLLAS KYRRHGVYVN 300 SRCILAIHNL AHQGVEPATT FSNLGIPLEW YGALEWVFPE WARLHALDKG EAVNHLKGAV 360 VTSDRILTVS QGYAWEITTP EGGCGLDKLL GSRAAVINGI TNGVDVDDWS PSVDRHLPAT 420 FTVGDMAGKA ECKAALQREL GLPVRPEVPL IGFIGRLDYQ KGPDIVQEGL PELMTDDIQV 480 VMLGSGDTEM EKWMKWAETQ YREKFRGWVG FSVPVAHRIT AGCDILLMPS RFEPCGLNQL 540 YAMRYGTIPV AHATGGLRDT IENYNPDANN GEGSGTGWIF SPLSKDAMVN SLWGAIFAYR 600 NDKEGWARMQ ERGMEKDVSW TRSALQYEQV FEWAMIDPPY AA* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 1.0e-106 | 131 | 631 | 519 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 2.0e-142 | 134 | 640 | 510 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-173 | 133 | 632 | 508 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 134 | 633 | 500 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 133 | 632 | 505 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN37578.1 | 0 | 125 | 640 | 124 | 641 | soluble starch synthase I [Colocasia esculenta] |
GenBank | ABV25893.1 | 0 | 125 | 642 | 115 | 633 | starch synthase isoform I [Manihot esculenta] |
EMBL | CBI23015.1 | 0 | 105 | 642 | 30 | 568 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001784416.1 | 0 | 116 | 642 | 1 | 527 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002277372.1 | 0 | 105 | 642 | 95 | 633 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 133 | 631 | 10 | 508 | A Chain A, Crystal Structure Of The C-terminal Globular Domain Of Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From Pyrococcus Horikoshii |
PDB | 3vue_A | 0 | 133 | 631 | 10 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 1rzv_B | 0 | 133 | 631 | 1 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 133 | 631 | 1 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 0 | 133 | 631 | 1 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO595058 | 492 | 150 | 641 | 0 |
HO581986 | 366 | 242 | 606 | 0 |
HO442390 | 314 | 173 | 486 | 0 |
HO442390 | 39 | 484 | 522 | 0.00000000005 |
HO581986 | 30 | 612 | 641 | 0.00002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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