Basic Information | |
---|---|
Species | Physcomitrella patens |
Cazyme ID | Pp1s404_31V6.1 |
Family | GT5 |
Protein Properties | Length: 637 Molecular Weight: 69900.3 Isoelectric Point: 5.859 |
Chromosome | Chromosome/Scaffold: 404 Start: 259538 End: 262682 |
Description | Glycogen/starch synthases, ADP-glucose type |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT5 | 128 | 626 | 0 |
NVVFVSAEVAPYSKTGGLGDVCGSLPIALAQRGHRVMVVAPRYMNGVTDAMYEGAFDCQCRIPVACFGATHEVAFFHEFRAGVDWVFVDHPSYHRQGTPY GDTRGAFGDNQFRFTLLCHAACEAPLVLALGGYTYGEKCVFVANDWHASLVPVLLASKYRRHGVYVNSRCILAIHNLAHQGVEPATTFSNLGIPLEWYGA LEWVFPEWARLHALDKGEAVNHLKGAVVTSDRILTVSQGYAWEITTPEGGCGLDKLLGSRAAVINGITNGVDVDDWSPSVDRHLPATFTVGDMAGKAECK AALQRELGLPVRPEVPLIGFIGRLDYQKGPDIVQEGLPELMTDDIQVVMLGSGDTEMEKWMKWAETQYREKFRGWVGFSVPVAHRITAGCDILLMPSRFE PCGLNQLYAMRYGTIPVAHATGGLRDTIENYNPDANNGEGSGTGWIFSPLSKDAMVNSLWGAIFAYRNDKEGWARMQERGMEKDVSWTRSALQYEQVFE |
Full Sequence |
---|
Protein Sequence Length: 637 Download |
MATIHQTNCF CKSVASNNRI EKVLTPRLQD VGVTTSRISR TLSLKTSAIE ALVVQVTPLK 60 AVSSSSSSRN GVWCSAVESS IGAWPQTPAP ENTLTFSADP SERNQEQEQM LKDLADSDET 120 KRAKTLLNVV FVSAEVAPYS KTGGLGDVCG SLPIALAQRG HRVMVVAPRY MNGVTDAMYE 180 GAFDCQCRIP VACFGATHEV AFFHEFRAGV DWVFVDHPSY HRQGTPYGDT RGAFGDNQFR 240 FTLLCHAACE APLVLALGGY TYGEKCVFVA NDWHASLVPV LLASKYRRHG VYVNSRCILA 300 IHNLAHQGVE PATTFSNLGI PLEWYGALEW VFPEWARLHA LDKGEAVNHL KGAVVTSDRI 360 LTVSQGYAWE ITTPEGGCGL DKLLGSRAAV INGITNGVDV DDWSPSVDRH LPATFTVGDM 420 AGKAECKAAL QRELGLPVRP EVPLIGFIGR LDYQKGPDIV QEGLPELMTD DIQVVMLGSG 480 DTEMEKWMKW AETQYREKFR GWVGFSVPVA HRITAGCDIL LMPSRFEPCG LNQLYAMRYG 540 TIPVAHATGG LRDTIENYNP DANNGEGSGT GWIFSPLSKD AMVNSLWGAI FAYRNDKEGW 600 ARMQERGMEK DVSWTRSALQ YEQVFEWAMI DPPYAA* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 1.0e-107 | 125 | 625 | 519 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 8.0e-143 | 128 | 634 | 510 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 9.0e-174 | 127 | 626 | 508 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 128 | 627 | 500 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 127 | 626 | 505 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN37578.1 | 0 | 119 | 634 | 124 | 641 | soluble starch synthase I [Colocasia esculenta] |
GenBank | ABV25893.1 | 0 | 119 | 636 | 115 | 633 | starch synthase isoform I [Manihot esculenta] |
EMBL | CBI23015.1 | 0 | 99 | 636 | 30 | 568 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001784416.1 | 0 | 110 | 636 | 1 | 527 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002277372.1 | 0 | 99 | 636 | 95 | 633 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 127 | 625 | 10 | 508 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
PDB | 3vue_A | 0 | 127 | 625 | 10 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 1rzv_B | 0 | 127 | 625 | 1 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 127 | 625 | 1 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 0 | 127 | 625 | 1 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO595058 | 492 | 144 | 635 | 0 |
HO581986 | 366 | 236 | 600 | 0 |
HO442390 | 314 | 167 | 480 | 0 |
HO442390 | 39 | 478 | 516 | 0.00000000004 |
HO581986 | 30 | 606 | 635 | 0.00002 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|