Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s409_2V6.1 |
Family | PL1 |
Protein Properties | Length: 517 Molecular Weight: 55537.9 Isoelectric Point: 5.4661 |
Chromosome | Chromosome/Scaffold: 409 Start: 12834 End: 15070 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 234 | 433 | 0 |
IIFAYSMTIKLKNELMITSYKTIDGRGVDVHIAGGAGFTLQFISNVIIHGIAIHDIKPTGPARIMTSTSHVGNRGRADGDAISIFTSKNIWVDHCYLARA ADGLVDVVRGSTAVSVTNCYFTQHNKVMLLGAHPQDYIDRNMYVTVAYNIFGPGLIQRLPRVRFGNVHVLNNDYTSGWGIYAIAGSEGPTILSQGNVFNS |
Full Sequence |
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Protein Sequence Length: 517 Download |
MVRLTLSLLG LLLVCARLGY VQSQDDTVGA TEPVIFTFAD DSTPQSASLA KQNDTFSNID 60 SPAPALESEE GKPEWTVADE SSGDMDSLAS ESNGNLVGTA DDDNTVIPSP TQPAAPEGPS 120 NSTDSKADAD GFDMVEGGDD KEFTTEDSDT EETSFAARHS CQTGNPVDDC WRCDRNWASN 180 RQRLASCAVG FGRNAIGGRN GRIYVVTSSR DDNPANPSPG TLRYAVTRPG PLWIIFAYSM 240 TIKLKNELMI TSYKTIDGRG VDVHIAGGAG FTLQFISNVI IHGIAIHDIK PTGPARIMTS 300 TSHVGNRGRA DGDAISIFTS KNIWVDHCYL ARAADGLVDV VRGSTAVSVT NCYFTQHNKV 360 MLLGAHPQDY IDRNMYVTVA YNIFGPGLIQ RLPRVRFGNV HVLNNDYTSG WGIYAIAGSE 420 GPTILSQGNV FNSYKGSKQV TKRIDDGGST MGGPKNWNWR SEGDKFLDGA FFTSVPMKWS 480 AQSYSKTVSC SARPASMVER MVKGAGPLSC RRGAVC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-28 | 245 | 506 | 275 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-54 | 245 | 431 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-64 | 240 | 431 | 203 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001757625.1 | 0 | 160 | 516 | 1 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767336.1 | 0 | 166 | 516 | 1 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767377.1 | 0 | 161 | 516 | 10 | 365 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783970.1 | 0 | 139 | 516 | 3 | 380 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784519.1 | 0 | 157 | 516 | 13 | 372 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 165 | 509 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 165 | 509 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-19 | 196 | 434 | 22 | 249 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000007 | 243 | 431 | 121 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000005 | 243 | 491 | 71 | 345 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |