| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s441_14V6.1 |
| Family | GT30 |
| Protein Properties | Length: 440 Molecular Weight: 48733.8 Isoelectric Point: 8.4952 |
| Chromosome | Chromosome/Scaffold: 441 Start: 40869 End: 44864 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT30 | 50 | 228 | 0 |
| WLERLGYPSRKRPSGLLIWFHAVSVGEGISAIPVILHCRDARPSITILMTTSTAAAHSVLEQRLPPEVILQFAPVDTPTAVERFLLHWAPQAAIFMESEL WPTLILQSAVKGIPLAILNARMSLKSFERWSASPMKPLVASMLSRFSLIAPLSNKEAVRYQILGAAPSVIHFLGNLKYA | |||
| Full Sequence |
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| Protein Sequence Length: 440 Download |
| MAGSGGDEED DVAARRARAL YTGVVMSITP LLHLSLQFRR LQGHSQYCMW LERLGYPSRK 60 RPSGLLIWFH AVSVGEGISA IPVILHCRDA RPSITILMTT STAAAHSVLE QRLPPEVILQ 120 FAPVDTPTAV ERFLLHWAPQ AAIFMESELW PTLILQSAVK GIPLAILNAR MSLKSFERWS 180 ASPMKPLVAS MLSRFSLIAP LSNKEAVRYQ ILGAAPSVIH FLGNLKYACA LGDSKKERSV 240 GMTDIEAQLV DRKVWLAAST HAEEEEAIIR IHKELNKSVS HLLTIIAPRQ PSRGQHIMIK 300 LQRQGFNVAV RSDGQRISGS TDVYLVDILG ELNHFYAIVP IAFVGGSLFQ GLAGHNIAEA 360 AAAGCIVLTG HHVGHFQEMV WEMQKMSPFS VIQVSVYWTS FWRLSVSVIE QVGFLLFFHD 420 IGNMHNECCN CLLRLMRTV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 4.0e-62 | 50 | 231 | 184 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 6.0e-93 | 20 | 378 | 362 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 5.0e-100 | 20 | 379 | 362 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30224.1 | 0 | 20 | 393 | 12 | 385 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_001785075.1 | 0 | 1 | 395 | 1 | 395 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002277784.1 | 0 | 20 | 395 | 12 | 387 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 12 | 395 | 3 | 388 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 11 | 395 | 2 | 390 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 1e-24 | 67 | 380 | 43 | 321 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 2xcu_C | 1e-24 | 67 | 380 | 43 | 321 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 2xcu_B | 1e-24 | 67 | 380 | 43 | 321 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 2xcu_A | 1e-24 | 67 | 380 | 43 | 321 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 2xci_D | 1e-24 | 67 | 380 | 43 | 321 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DC910575 | 197 | 1 | 197 | 0 |
| FC445552 | 161 | 280 | 440 | 0 |
| DT638640 | 273 | 50 | 322 | 0 |
| DY279419 | 352 | 37 | 387 | 0 |
| DY266328 | 358 | 20 | 376 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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