Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s446_3V6.2 |
Family | CE8 |
Protein Properties | Length: 373 Molecular Weight: 40385.4 Isoelectric Point: 5.3523 |
Chromosome | Chromosome/Scaffold: 446 Start: 30878 End: 32635 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 92 | 366 | 0 |
GGGGYQKVQDAIDAAPQGTRTVIQINPGTYREKILVPKSKILTFQGIENPILSWGDTANSAGSTQSSASTTIMADDFIANGIIFQNTAPAPPGGAIGRQA VAMRIAGDKGAFYDCKFYGAQDTLYDQEGRHYFKNCYIEGSIDFIFGDGKSIYQNCHLNSIAHPGSGSLTAQKRSGDEDTGFSFVGCSITGTGPIYLGRA WGPSSRVVFIQCYISDIILPEGWYDWGDSSRQKTVLYGQYQCSGPGASESGRVGWSHELTAGQAIAFSSVSFIDG |
Full Sequence |
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Protein Sequence Length: 373 Download |
MMQPTSRPPL RLVVWAMLMP LIWLQAVVGQ RDPFRLITDP DRTLNWRAVE ADFLTWVDRV 60 EHDYVESVRA GEAVLGCADH SILAGGNTLV VGGGGYQKVQ DAIDAAPQGT RTVIQINPGT 120 YREKILVPKS KILTFQGIEN PILSWGDTAN SAGSTQSSAS TTIMADDFIA NGIIFQNTAP 180 APPGGAIGRQ AVAMRIAGDK GAFYDCKFYG AQDTLYDQEG RHYFKNCYIE GSIDFIFGDG 240 KSIYQNCHLN SIAHPGSGSL TAQKRSGDED TGFSFVGCSI TGTGPIYLGR AWGPSSRVVF 300 IQCYISDIIL PEGWYDWGDS SRQKTVLYGQ YQCSGPGASE SGRVGWSHEL TAGQAIAFSS 360 VSFIDGNQWL HT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 5.0e-93 | 99 | 370 | 286 | + pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-100 | 96 | 370 | 282 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 3.0e-102 | 96 | 370 | 281 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 5.0e-104 | 99 | 370 | 285 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 8.0e-126 | 96 | 370 | 287 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001764253.1 | 0 | 92 | 370 | 1 | 283 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774315.1 | 0 | 92 | 370 | 3 | 286 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001777108.1 | 0 | 93 | 370 | 8 | 291 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785149.1 | 0 | 94 | 370 | 1 | 277 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785334.1 | 0 | 92 | 370 | 22 | 303 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 80 | 371 | 1 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3.99931e-42 | 92 | 372 | 11 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 7e-18 | 93 | 296 | 15 | 249 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 7e-18 | 93 | 296 | 15 | 249 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 7e-18 | 93 | 296 | 15 | 249 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |