Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s45_249V6.1 |
Family | CE8 |
Protein Properties | Length: 348 Molecular Weight: 38015.3 Isoelectric Point: 5.4529 |
Chromosome | Chromosome/Scaffold: 45 Start: 1976226 End: 1978653 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 56 | 340 | 0 |
YVDQAGYGNFRTVQEAVNAVPEGNSMRVIILVKPGIYRERVNIPKSKGYITLQGSGKESTSIDYNENAASAGSTYDSATVAVFSDYFVARDISFRNSAPA PPSGAVNMQAVALRITGDCAAFYGCGFYGSQDTLNDDMGRHYYKNCEIVGSIDFIFGDAQSLYKDCALNVNAATYGSVTAQKRESSSRRTGFSFVGGSLL GSGQVYLGRAWGPYSRVVFAFTFMQDIVIREGWHNWNDPNRQRTAYYGQYKCLGPGATENGRVEWSHELTDAEAAPFLSLAFIDG |
Full Sequence |
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Protein Sequence Length: 348 Download |
MEKKAPRRDA ACVVAAEFLS WVASVVTDYE NKTSSQTNSP SRLPNLGIKA EPPIYYVDQA 60 GYGNFRTVQE AVNAVPEGNS MRVIILVKPG IYRERVNIPK SKGYITLQGS GKESTSIDYN 120 ENAASAGSTY DSATVAVFSD YFVARDISFR NSAPAPPSGA VNMQAVALRI TGDCAAFYGC 180 GFYGSQDTLN DDMGRHYYKN CEIVGSIDFI FGDAQSLYKD CALNVNAATY GSVTAQKRES 240 SSRRTGFSFV GGSLLGSGQV YLGRAWGPYS RVVFAFTFMQ DIVIREGWHN WNDPNRQRTA 300 YYGQYKCLGP GATENGRVEW SHELTDAEAA PFLSLAFIDG QDWVTEP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 6.0e-99 | 19 | 345 | 334 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-104 | 57 | 344 | 288 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-105 | 20 | 347 | 330 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-107 | 54 | 344 | 299 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-136 | 56 | 345 | 297 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27989.1 | 0 | 63 | 344 | 24 | 311 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001760885.1 | 0 | 81 | 347 | 1 | 267 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769271.1 | 0 | 14 | 346 | 36 | 368 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002330522.1 | 0 | 63 | 344 | 92 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531506.1 | 0 | 63 | 344 | 77 | 364 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 53 | 344 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.4013e-45 | 57 | 344 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-19 | 65 | 333 | 44 | 357 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 7e-19 | 65 | 332 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 7e-19 | 65 | 332 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CJ970557 | 192 | 1 | 192 | 0 |
BJ977246 | 202 | 147 | 348 | 0 |
DT759916 | 270 | 81 | 344 | 0 |
FC372426 | 282 | 64 | 344 | 0 |
BY991187 | 273 | 73 | 344 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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