| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s45_65V6.1 |
| Family | PL1 |
| Protein Properties | Length: 470 Molecular Weight: 51244 Isoelectric Point: 7.3227 |
| Chromosome | Chromosome/Scaffold: 45 Start: 455595 End: 458666 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 188 | 387 | 0 |
| ITFSQDMSIHLRNELILTSFKTIDGRGFNVHIAGGAGLTLQSISNVIIHGVHIHDTVPTGPATVRSSMTHSGGRGRTDGDAINIYSSHDIWIDHCYFANG ADGLVDVTMGSTGVTISNNYFTDHDKVILLGAHPRDMFDMHMRVTVAYNHFGPRLIERLPRIRHGCVHVLNNMYEGWGMYAIGGSEGPTIVSQGNVFTAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 470 Download |
| MHVHVIVVVW ALVVLLQLGV VEKFTSSYRK FGSPTMQVRF LELARSGGLV QPLPHVERWL 60 LRMLVSRRSE PSDNQNTWVA NTPSTYSHDK FSSMRSTCRM KKINHNNSRR MMGECMTGNL 120 IDDCWRCDNQ WRQHRQALAK CALGAGSNVV GGANGRIYVV TDDSDADAVN PIPGTLRYGA 180 IQQEPLWITF SQDMSIHLRN ELILTSFKTI DGRGFNVHIA GGAGLTLQSI SNVIIHGVHI 240 HDTVPTGPAT VRSSMTHSGG RGRTDGDAIN IYSSHDIWID HCYFANGADG LVDVTMGSTG 300 VTISNNYFTD HDKVILLGAH PRDMFDMHMR VTVAYNHFGP RLIERLPRIR HGCVHVLNNM 360 YEGWGMYAIG GSEGPTIVSQ GNVFTAPNGG NKEVSKRLQD GDDGSLSNWN WQSSGDVFLN 420 GAFFTASGAP LGSQVYSTAL NDVTALPATM VATITADAGP LACASEGIC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12708 | Pectate_lyase_3 | 0.002 | 209 | 314 | 107 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| COG3866 | PelB | 2.0e-29 | 206 | 384 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-57 | 201 | 384 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-68 | 193 | 388 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001760835.1 | 0 | 100 | 469 | 1 | 370 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001774203.1 | 0 | 106 | 462 | 1 | 358 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001776371.1 | 0 | 98 | 469 | 4 | 375 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001783165.1 | 0 | 110 | 462 | 10 | 363 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001785953.1 | 0 | 103 | 462 | 30 | 383 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 119 | 438 | 2 | 323 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 119 | 438 | 2 | 323 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-22 | 199 | 384 | 61 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 4e-19 | 209 | 385 | 135 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 3e-17 | 209 | 387 | 151 | 349 | A Chain A, Bacillus Subtilis Pectate Lyase |
