Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s461_15V6.1 |
Family | CE8 |
Protein Properties | Length: 364 Molecular Weight: 39766.9 Isoelectric Point: 8.4544 |
Chromosome | Chromosome/Scaffold: 461 Start: 97605 End: 99581 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 74 | 356 | 0 |
IVVDKSGKGDFTKIQDAVDSIPKGNNKRVTIHIMNGYYSEKINVPHDNVYFKCSGKRTILAWGDTAEKAGSTSLSASTAVTGDNFLATDCTFVNTAPAPP GGAVGKQAVAFRIQGDKGAFYRCFFYGAQDTLYSKEGRHYFRECHIIGSIDFIFGDGTAMFHKCKIKSIAFQNSGSISAQKRESAESPSGFSFVGCHISG SGTIYLGRAWGSHSRTVFIRCYMADMILPIGWQDWNDPARQKTVFYGEYLCSGPGSIRSGRAKWSRELTKKEAEPFMTRKFVN |
Full Sequence |
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Protein Sequence Length: 364 Download |
MAALRVLSYF VVFGLVSACL FAASEAAETG SFEDWIGQIT AKVNERESAP EMSGVMGTMG 60 DDDSNSDGAR KLYIVVDKSG KGDFTKIQDA VDSIPKGNNK RVTIHIMNGY YSEKINVPHD 120 NVYFKCSGKR TILAWGDTAE KAGSTSLSAS TAVTGDNFLA TDCTFVNTAP APPGGAVGKQ 180 AVAFRIQGDK GAFYRCFFYG AQDTLYSKEG RHYFRECHII GSIDFIFGDG TAMFHKCKIK 240 SIAFQNSGSI SAQKRESAES PSGFSFVGCH ISGSGTIYLG RAWGSHSRTV FIRCYMADMI 300 LPIGWQDWND PARQKTVFYG EYLCSGPGSI RSGRAKWSRE LTKKEAEPFM TRKFVNGDKW 360 LGW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 1.0e-87 | 73 | 361 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 8.0e-92 | 64 | 361 | 301 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-94 | 69 | 361 | 297 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 3.0e-95 | 74 | 361 | 299 | + pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-112 | 74 | 361 | 298 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001766064.1 | 0 | 74 | 361 | 13 | 290 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774315.1 | 0 | 78 | 361 | 1 | 286 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778325.1 | 0 | 32 | 361 | 44 | 368 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785149.1 | 0 | 82 | 361 | 1 | 277 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785334.1 | 0 | 59 | 363 | 1 | 305 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 74 | 361 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.4013e-45 | 75 | 361 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 6e-21 | 75 | 350 | 34 | 357 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-17 | 84 | 355 | 18 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-17 | 84 | 355 | 18 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |