Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s55_167V6.2 |
Family | CE8 |
Protein Properties | Length: 414 Molecular Weight: 46195.6 Isoelectric Point: 7.9799 |
Chromosome | Chromosome/Scaffold: 55 Start: 1043891 End: 1046668 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 105 | 396 | 0 |
ITVSKSGKDDFTTINAALDSIAEHEKHRTVIHIREGIYEEKIVINVSKPYITFRGDGRDKTIIQWGDKAGDFDDDDQLLKTYRSATVGVNSQYFIAENIQ FRNTAPQPPPGAVLRQAVAFRITGDRAAFYNSSFYGYQDTLYDHKGRHYFENCYIQGSIDFVFGNGRSLYKNCHLHSEAKVFGSVTAQKRNESHMNTGFS FVDASLTGTGPIYLGRAWGNFSRTVYSYTWMDNIVYPPGWSDFGFADRQSKVFYAQYNCKGPGAYSKERVAWVRELTAEEAKPFLSVHFING |
Full Sequence |
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Protein Sequence Length: 414 Download |
MGIARRRSAL LLLLVSFVFC AAISVAADDD DNVDSWLKLM ADTSGSDADS DYDFETDDTP 60 ASDSVYGDSL VAEQDNHPAD GTKSGGASNG MFVKFPKPKG KSRKITVSKS GKDDFTTINA 120 ALDSIAEHEK HRTVIHIREG IYEEKIVINV SKPYITFRGD GRDKTIIQWG DKAGDFDDDD 180 QLLKTYRSAT VGVNSQYFIA ENIQFRNTAP QPPPGAVLRQ AVAFRITGDR AAFYNSSFYG 240 YQDTLYDHKG RHYFENCYIQ GSIDFVFGNG RSLYKNCHLH SEAKVFGSVT AQKRNESHMN 300 TGFSFVDASL TGTGPIYLGR AWGNFSRTVY SYTWMDNIVY PPGWSDFGFA DRQSKVFYAQ 360 YNCKGPGAYS KERVAWVREL TAEEAKPFLS VHFINGKTWL KKYIGKPTKT KKN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 6.0e-103 | 74 | 400 | 336 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 6.0e-107 | 102 | 400 | 301 | + pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-112 | 103 | 400 | 300 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 2.0e-116 | 94 | 400 | 308 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-144 | 95 | 400 | 310 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79461.1 | 0 | 82 | 400 | 61 | 378 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_001756557.1 | 0 | 103 | 400 | 1 | 298 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001762576.1 | 0 | 91 | 413 | 1 | 323 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001764345.1 | 0 | 91 | 413 | 1 | 323 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002514210.1 | 0 | 102 | 401 | 82 | 382 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 105 | 401 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4.00001e-40 | 106 | 401 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 5e-30 | 113 | 388 | 42 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 6e-22 | 107 | 388 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 6e-22 | 107 | 388 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |