Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s563_1V6.2 |
Family | PL1 |
Protein Properties | Length: 422 Molecular Weight: 45535.9 Isoelectric Point: 6.0846 |
Chromosome | Chromosome/Scaffold: 563 Start: 376 End: 3154 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 151 | 350 | 0 |
WIVFSRNMNIKLKKELIMNSYKTIDGRGQNVHIAGGACITMQFVNNIIIHGVHIHDCKSVGSGDVRSSPTHAGSRGKTDGDGINIFGSRDIWVDHCYFSN CADGLVDVIEGSTAITITNSYFENHDKVMLLGAHDSDKQDRNMQVTVAFNHFGKNLVERMPRCRNGVFHVVNNNYEGWGMYAIGGSAFPTINSEGNRFFA |
Full Sequence |
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Protein Sequence Length: 422 Download |
MAKENSAWLQ LVLGFLLLAS VALRECAALR PLTSFSASQV PEEHQTPVGV AESKDEEPAE 60 LGEVQCSSSN STRRSLGGCG TGNPVDDCWR CSSNWESNRQ GLANCAIGFG RNAVGGRNGK 120 IYVVTDSSDD DVVNPEPGTL RWGVIQEEPL WIVFSRNMNI KLKKELIMNS YKTIDGRGQN 180 VHIAGGACIT MQFVNNIIIH GVHIHDCKSV GSGDVRSSPT HAGSRGKTDG DGINIFGSRD 240 IWVDHCYFSN CADGLVDVIE GSTAITITNS YFENHDKVML LGAHDSDKQD RNMQVTVAFN 300 HFGKNLVERM PRCRNGVFHV VNNNYEGWGM YAIGGSAFPT INSEGNRFFA PDGSNMKEVT 360 KRLDDGGDNW RSAGDIFLNG AFFTASGVSG QSHFYAKATS LSARPAAMVP SMTNDAGPLA 420 L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-27 | 231 | 417 | 204 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-59 | 163 | 348 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-68 | 157 | 352 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001766376.1 | 0 | 26 | 421 | 26 | 427 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769269.1 | 0 | 79 | 421 | 1 | 348 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774203.1 | 0 | 70 | 421 | 1 | 359 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783165.1 | 0 | 74 | 421 | 10 | 364 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785953.1 | 0 | 68 | 421 | 31 | 384 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 83 | 417 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 83 | 417 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-20 | 114 | 348 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-16 | 161 | 348 | 120 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 8e-16 | 156 | 392 | 136 | 387 | A Chain A, Bacillus Subtilis Pectate Lyase |