Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s563_1V6.3 |
Family | PL1 |
Protein Properties | Length: 417 Molecular Weight: 44989.3 Isoelectric Point: 6.2316 |
Chromosome | Chromosome/Scaffold: 563 Start: 376 End: 3154 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 146 | 345 | 0 |
WIVFSRNMNIKLKKELIMNSYKTIDGRGQNVHIAGGACITMQFVNNIIIHGVHIHDCKSVGSGDVRSSPTHAGSRGKTDGDGINIFGSRDIWVDHCYFSN CADGLVDVIEGSTAITITNSYFENHDKVMLLGAHDSDKQDRNMQVTVAFNHFGKNLVERMPRCRNGVFHVVNNNYEGWGMYAIGGSAFPTINSEGNRFFA |
Full Sequence |
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Protein Sequence Length: 417 Download |
MAKENSAWLQ LVLGFLLLAS VALRECAALR PLTSFSASQV PEEHQTPVGV AESKDEEPAE 60 LGSSNSTRRS LGGCGTGNPV DDCWRCSSNW ESNRQGLANC AIGFGRNAVG GRNGKIYVVT 120 DSSDDDVVNP EPGTLRWGVI QEEPLWIVFS RNMNIKLKKE LIMNSYKTID GRGQNVHIAG 180 GACITMQFVN NIIIHGVHIH DCKSVGSGDV RSSPTHAGSR GKTDGDGINI FGSRDIWVDH 240 CYFSNCADGL VDVIEGSTAI TITNSYFENH DKVMLLGAHD SDKQDRNMQV TVAFNHFGKN 300 LVERMPRCRN GVFHVVNNNY EGWGMYAIGG SAFPTINSEG NRFFAPDGSN MKEVTKRLDD 360 GGDNWRSAGD IFLNGAFFTA SGVSGQSHFY AKATSLSARP AAMVPSMTND AGPLAL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-27 | 226 | 412 | 204 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-59 | 158 | 343 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-67 | 152 | 347 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001766376.1 | 0 | 26 | 416 | 26 | 427 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769269.1 | 0 | 74 | 416 | 1 | 348 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774203.1 | 0 | 65 | 416 | 1 | 359 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783165.1 | 0 | 61 | 416 | 2 | 364 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785953.1 | 0 | 55 | 416 | 26 | 384 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 78 | 412 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 78 | 412 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-20 | 109 | 343 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-16 | 156 | 343 | 120 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 7e-16 | 151 | 387 | 136 | 387 | A Chain A, Bacillus Subtilis Pectate Lyase |