| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s58_31V6.2 |
| Family | GH16 |
| Protein Properties | Length: 383 Molecular Weight: 42679.4 Isoelectric Point: 6.0436 |
| Chromosome | Chromosome/Scaffold: 58 Start: 158849 End: 159997 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH16 | 21 | 256 | 8.1e-23 |
| DDFTGSGYTLDTNFRHPMGKGKWKWDAASNKEIHWDPACSSIVQDTSRGKSILRVSVWSDWFHRIDRLATKQQFGYGYYESRCRFKGASGMHSAFWLLPE AMVSDAVPPGEIVGGIEVDVVEHRAKDSGGNDISTQGSTAVHWGGYGANHRSSAYKLMNLPVASSAWATFGVLHQPGGLKWYWNGKEVNSVAMWSPMPNS LFFSTEVNESGGWAGDDLSSYGPISNPEGYIEIDYC | |||
| Full Sequence |
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| Protein Sequence Length: 383 Download |
| MTHQPSIPPT AGNRWTNKFW DDFTGSGYTL DTNFRHPMGK GKWKWDAASN KEIHWDPACS 60 SIVQDTSRGK SILRVSVWSD WFHRIDRLAT KQQFGYGYYE SRCRFKGASG MHSAFWLLPE 120 AMVSDAVPPG EIVGGIEVDV VEHRAKDSGG NDISTQGSTA VHWGGYGANH RSSAYKLMNL 180 PVASSAWATF GVLHQPGGLK WYWNGKEVNS VAMWSPMPNS LFFSTEVNES GGWAGDDLSS 240 YGPISNPEGY IEIDYCGFWL QCTSHSLSST TSYEDPTMLT TLKIHATTTV PVHQEKPCPS 300 HTPTLDINFN PQDSIAAREK DVQSFSKLHK VEEQDDETTN LARFCHLKLQ SAHNEIGPVE 360 DDRIKLDAMA EQHDESVRKT ET* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00722 | Glyco_hydro_16 | 1.0e-7 | 87 | 257 | 177 | + Glycosyl hydrolases family 16. | ||
| COG2273 | SKN1 | 6.0e-8 | 90 | 247 | 162 | + Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] | ||
| cd08023 | GH16_laminarinase_like | 1.0e-9 | 87 | 214 | 131 | + Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans. | ||
| cd00413 | Glyco_hydrolase_16 | 2.0e-19 | 21 | 259 | 247 | + glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001756169.1 | 0 | 3 | 280 | 901 | 1178 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001757963.1 | 0 | 3 | 259 | 64 | 319 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_002135388.1 | 0.000000000000005 | 42 | 259 | 80 | 296 | glycoside hydrolase family 16 [Anaeromyxobacter sp. K] |
| RefSeq | YP_466157.1 | 6e-16 | 42 | 259 | 65 | 281 | hypothetical protein Adeh_2950 [Anaeromyxobacter dehalogenans 2CP-C] |
| RefSeq | ZP_03128000.1 | 0.000000000000007 | 5 | 276 | 32 | 296 | glycoside hydrolase family 16 [Chthoniobacter flavus Ellin428] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4ate_A | 0.006 | 9 | 227 | 12 | 224 | A Chain A, High Resolution Crystal Structure Of Beta-Porphyranase A From Zobellia Galactanivorans |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DC936974 | 218 | 1 | 218 | 0 |
| DC957249 | 187 | 197 | 383 | 0 |
| BJ946270 | 189 | 2 | 190 | 0 |
| CN201099 | 213 | 84 | 296 | 0 |
| BJ160780 | 168 | 2 | 169 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Physcomitrella patens | Pp1s21_68V6.2 | Pp1s30_337V6.1 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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