Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s59_288V6.1 |
Family | CE8 |
Protein Properties | Length: 396 Molecular Weight: 44381.9 Isoelectric Point: 6.7808 |
Chromosome | Chromosome/Scaffold: 59 Start: 1498288 End: 1500627 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 105 | 392 | 0 |
LVVSLDGTAQYSNIQDAIDQVPEFNTRRVTIFVTSGVYEEKVIIPPTKPYLTLLGEGRTRTIITWHDTAASAGTLMSASVTVESDHFIARDISFRNTAGY PAPNKTNMQAAAFRISGDKAFLYRCNFYGHQDTLYDHSGRHYYFRCYIEGSEDFIFGIARSLFERCWLHSIAIGEGGALVAQGKYFPGSIMGPSGFSFLR CNITGTGRPYLGRAWGQYSTVVYSYCQIDANVIPVGWYDWGLRERDGTVYLGEYECTGKGANTTGRVGWSRELTTEDAQPFLSIQFVD |
Full Sequence |
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Protein Sequence Length: 396 Download |
MADLRIFSKK SFLLVQIVCT LLMSFATRNI SAALETEVTT YNVSDMVPFD NSPSNISHRY 60 QNLRALFGQH RTGHSVRSQA WFSDYSQGRS IFKNVSEYYD EGIVLVVSLD GTAQYSNIQD 120 AIDQVPEFNT RRVTIFVTSG VYEEKVIIPP TKPYLTLLGE GRTRTIITWH DTAASAGTLM 180 SASVTVESDH FIARDISFRN TAGYPAPNKT NMQAAAFRIS GDKAFLYRCN FYGHQDTLYD 240 HSGRHYYFRC YIEGSEDFIF GIARSLFERC WLHSIAIGEG GALVAQGKYF PGSIMGPSGF 300 SFLRCNITGT GRPYLGRAWG QYSTVVYSYC QIDANVIPVG WYDWGLRERD GTVYLGEYEC 360 TGKGANTTGR VGWSRELTTE DAQPFLSIQF VDGPW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-93 | 103 | 393 | 291 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 7.0e-98 | 80 | 393 | 320 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 1.0e-99 | 104 | 393 | 298 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-103 | 104 | 393 | 299 | + pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-121 | 104 | 393 | 298 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27989.1 | 0 | 115 | 393 | 26 | 307 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 86 | 393 | 66 | 377 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_001763134.1 | 0 | 115 | 393 | 1 | 279 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769817.1 | 0 | 103 | 393 | 52 | 346 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002514210.1 | 0 | 89 | 393 | 69 | 377 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 102 | 393 | 6 | 304 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9.99995e-41 | 106 | 393 | 6 | 300 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-16 | 101 | 274 | 5 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-16 | 101 | 274 | 5 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-16 | 101 | 274 | 5 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |