| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s60_185V6.1 |
| Family | GH28 |
| Protein Properties | Length: 447 Molecular Weight: 49280.3 Isoelectric Point: 8.4494 |
| Chromosome | Chromosome/Scaffold: 60 Start: 1113805 End: 1115859 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 66 | 413 | 0 |
| RASDGGAQLIVGPGRWLTAPFNVTSHMTLFLSRGATIVAIQDAGLWPILPALPSYGRGRELPGLRYSSLIHGQHVEDFVLTGHNGSIDGQGGWWWEQHKQ KRLRYTRGRLVELMWSTNIVISDVTLQNSPFWHLHPYDCTNVTISGVTILAPLDAPNTDGIDPDSCKNVLVENCYISVGDDAVAVKSGWDKYGIEYNRPC VNVTIRNVIARSQISAGISIGSEMSGGVEQVLVEDVYIWGSRRGIRIKTSPGRGGYVKNILYKNLTLIDVRVGIVVKTDYGEHPDLDFDPKALPVVANIS FDGVYGSSVRYPVRMFGSKEVPITGIDIRNMNVGLTRKKRNVFTCDFL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 447 Download |
| MSWALSFSLV FFWQVNYRNR HGLPPPPPIP NLRPHVFNLT DFGAVGDGYS VNTRCFEDAI 60 AAIKERASDG GAQLIVGPGR WLTAPFNVTS HMTLFLSRGA TIVAIQDAGL WPILPALPSY 120 GRGRELPGLR YSSLIHGQHV EDFVLTGHNG SIDGQGGWWW EQHKQKRLRY TRGRLVELMW 180 STNIVISDVT LQNSPFWHLH PYDCTNVTIS GVTILAPLDA PNTDGIDPDS CKNVLVENCY 240 ISVGDDAVAV KSGWDKYGIE YNRPCVNVTI RNVIARSQIS AGISIGSEMS GGVEQVLVED 300 VYIWGSRRGI RIKTSPGRGG YVKNILYKNL TLIDVRVGIV VKTDYGEHPD LDFDPKALPV 360 VANISFDGVY GSSVRYPVRM FGSKEVPITG IDIRNMNVGL TRKKRNVFTC DFLQGRVVGK 420 VFPSPCKALI REEASQTATG ISTTFE* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-26 | 36 | 426 | 407 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-29 | 1 | 426 | 441 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-33 | 2 | 398 | 408 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-40 | 135 | 398 | 274 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-63 | 36 | 409 | 396 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001763290.1 | 0 | 1 | 439 | 1 | 439 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002277239.1 | 0 | 3 | 445 | 38 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 1 | 444 | 37 | 485 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 1 | 445 | 37 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 3 | 445 | 37 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 27 | 382 | 21 | 394 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 27 | 382 | 21 | 394 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 27 | 382 | 21 | 394 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 27 | 382 | 21 | 394 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 9e-25 | 81 | 345 | 52 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778855 | 416 | 3 | 414 | 0 |
| FE707848 | 301 | 38 | 337 | 0 |
| CX102356 | 331 | 92 | 421 | 0 |
| FN769574 | 315 | 111 | 424 | 0 |
| EX126330 | 298 | 102 | 398 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
