| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s61_217V6.1 |
| Family | PL1 |
| Protein Properties | Length: 570 Molecular Weight: 63093.1 Isoelectric Point: 4.9386 |
| Chromosome | Chromosome/Scaffold: 61 Start: 1213486 End: 1215833 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 291 | 488 | 0 |
| ITFAKSMTIKLKGELWVNSYKTIDGRGADVHVVGAQITIQNASHVIVHGIHIHDIEVTGPTAIRVSPTGVVLRVESDGDALHILNSKHVWVDHCYLAKAS DGLLDATRGSTMITVSNCLFENHNKVLLFGSSPTWTADRNMKATVAFNKFGKGLIQRMPRCRFGVFHILNNDYSEGWDKYAIGGSENPTILSEGNYFR | |||
| Full Sequence |
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| Protein Sequence Length: 570 Download |
| MATRMFPRLL LLVLTSQWTL LHARSVAGDY RTQQDYPAQS FMDFPSDPVV AEEYVYGRVP 60 DYQDSPYEFP SDPVLFDTQS NTQLDMPTFT KKTGPFQYSA MQGSEQRPIE MPEEYDSFAS 120 TESDPTFDTF INSPEVVDDA SLRSFSGDTV YENDESGERR GFHTQYEYEN DEVFFNTSSA 180 RTIYRGMDNE LSLAAVDMLN ATTADDTLAS LAKVLGGCGT GNPIDDCWRC DLNWRSHRQA 240 LAGCVTGFGR NAEGGKNGPI YVVTRKDDDD PEYPRPGTLR HALSRNGPLW ITFAKSMTIK 300 LKGELWVNSY KTIDGRGADV HVVGAQITIQ NASHVIVHGI HIHDIEVTGP TAIRVSPTGV 360 VLRVESDGDA LHILNSKHVW VDHCYLAKAS DGLLDATRGS TMITVSNCLF ENHNKVLLFG 420 SSPTWTADRN MKATVAFNKF GKGLIQRMPR CRFGVFHILN NDYSEGWDKY AIGGSENPTI 480 LSEGNYFRPT REKEVTKRID DNGPTFGSWE NWNWVSSGDI FLDGSYFTGS GAEITASVYA 540 DAFSTSSRPG HLVPAFTKSA GPLKSVATS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-26 | 254 | 536 | 302 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-52 | 288 | 487 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-57 | 297 | 487 | 202 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001751580.1 | 0 | 215 | 564 | 1 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001763554.1 | 0 | 198 | 569 | 1 | 372 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001771554.1 | 0 | 215 | 563 | 1 | 350 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001776371.1 | 0 | 221 | 567 | 23 | 370 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001784519.1 | 0 | 218 | 563 | 17 | 364 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 222 | 561 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 222 | 561 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-22 | 279 | 487 | 38 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 7e-17 | 305 | 487 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.000000000000005 | 312 | 466 | 151 | 318 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 23 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778688 | 350 | 218 | 563 | 0 |
| FG606120 | 315 | 218 | 528 | 0 |
| FC426281 | 255 | 218 | 471 | 0 |
| CK262438 | 303 | 233 | 531 | 0 |
| HO772321 | 287 | 218 | 500 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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