Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s67_157V6.1 |
Family | CE8 |
Protein Properties | Length: 359 Molecular Weight: 39097.8 Isoelectric Point: 7.9257 |
Chromosome | Chromosome/Scaffold: 67 Start: 1100396 End: 1102863 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 76 | 350 | 0 |
IVVDQSGAGHYKTINEAINAVPLHNKYAVTIKVNPGIYIERVMVPKSKWRITLQGSGRDVTKITSRNAAGDTGTTYTTSTFGVSAPYFTARNITFEQQAV ALRTTGDFNAFYGCAFLGQQDTLYDDRGRHYFKESLIVGSVDFIFGDGKSLYQNCELRVLPSSGGSLTAQKRLSFSEDTGYSFVNCKITGSGPSTVYLGR AWGPYSRVVFAYSEFADIINPVGWYNWADPARERTVFYGQYKCFGPGANEASRVGWSVELTDAQAAPFMTLGYID |
Full Sequence |
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Protein Sequence Length: 359 Download |
MARLWGSIFI LVFFSLVSSL ELVSSASEVT SSRSKAIASF QSWVDRVGAN HSAFENTAKS 60 SGSTGDLSRK VAEGVIVVDQ SGAGHYKTIN EAINAVPLHN KYAVTIKVNP GIYIERVMVP 120 KSKWRITLQG SGRDVTKITS RNAAGDTGTT YTTSTFGVSA PYFTARNITF EQQAVALRTT 180 GDFNAFYGCA FLGQQDTLYD DRGRHYFKES LIVGSVDFIF GDGKSLYQNC ELRVLPSSGG 240 SLTAQKRLSF SEDTGYSFVN CKITGSGPST VYLGRAWGPY SRVVFAYSEF ADIINPVGWY 300 NWADPARERT VFYGQYKCFG PGANEASRVG WSVELTDAQA APFMTLGYID GGLWVTEE* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 6.0e-87 | 75 | 356 | 301 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-96 | 75 | 355 | 301 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-101 | 63 | 355 | 299 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-102 | 75 | 354 | 293 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-129 | 40 | 356 | 337 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 40 | 355 | 53 | 377 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_001764301.1 | 0 | 80 | 355 | 1 | 287 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769271.1 | 0 | 1 | 357 | 1 | 368 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002330522.1 | 0 | 20 | 355 | 39 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 7 | 355 | 9 | 381 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 76 | 355 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2.99878e-43 | 77 | 355 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-18 | 85 | 328 | 43 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 1e-17 | 73 | 343 | 5 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 1e-17 | 73 | 343 | 5 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |