Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s67_160V6.1 |
Family | PL1 |
Protein Properties | Length: 409 Molecular Weight: 44514 Isoelectric Point: 6.1028 |
Chromosome | Chromosome/Scaffold: 67 Start: 1135292 End: 1137720 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 134 | 332 | 0 |
IIFDRNMNIKLKNELIVQSYKTIDGRGANVHIAGGGSITIQYVHNVIIHGVHIHDIKQTGPAVIRGSPSHFGDRGKADGDAISIYGSHDIWIDHNYLSHC TDGLVDVTEASTAVTISNNYFTDHDKVMLLGGHPKDSFDKVMQVTVAFNHFGEGLVERIPRCRFGYFHIVNNFYSPWLMYAIGGSESPTINSEGNFFMA |
Full Sequence |
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Protein Sequence Length: 409 Download |
MAPNFLQIML ILVATLPMCW AARPVETSVT IVSGENAASA VFESDIPSSA HNYTRRLLKG 60 CGTGNPIDDC WRCDPHWRAN RQSLANCAIG FGKNAIGGKT GRIYVVTDDS DDDVIDPAPG 120 TLRYGAMQTE PLWIIFDRNM NIKLKNELIV QSYKTIDGRG ANVHIAGGGS ITIQYVHNVI 180 IHGVHIHDIK QTGPAVIRGS PSHFGDRGKA DGDAISIYGS HDIWIDHNYL SHCTDGLVDV 240 TEASTAVTIS NNYFTDHDKV MLLGGHPKDS FDKVMQVTVA FNHFGEGLVE RIPRCRFGYF 300 HIVNNFYSPW LMYAIGGSES PTINSEGNFF MAGSFKEVTK RIEDDGSSID GWEKWNWRSS 360 GDIFQDGAFF TDSGSAGGGS FYAKATSFSA RPAALVASMT NDAGPLML* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 1.0e-27 | 145 | 334 | 204 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 7.0e-59 | 145 | 330 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 5.0e-62 | 139 | 334 | 208 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001764359.1 | 0 | 25 | 408 | 2 | 385 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769269.1 | 0 | 61 | 408 | 1 | 348 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774203.1 | 0 | 52 | 408 | 1 | 359 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783165.1 | 0 | 56 | 408 | 10 | 364 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785953.1 | 0 | 24 | 408 | 6 | 384 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 65 | 404 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 65 | 404 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-24 | 134 | 331 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000004 | 143 | 308 | 121 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000000004 | 143 | 338 | 71 | 284 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |