y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s67_6V6.1 |
Family | CE8 |
Protein Properties | Length: 371 Molecular Weight: 39465.2 Isoelectric Point: 7.7325 |
Chromosome | Chromosome/Scaffold: 67 Start: 59551 End: 61921 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 89 | 364 | 0 |
GAGGYKTVQSAVNDAASGGSRTIIQINSGTYREKVTVLKGKTITFQGVNNPVIVYDDTAGSAGSTSNSASVTILADNFIARGVTFKNSAPAPPGGAVNKQ AVALRISGDKGAFYNCAFIGAQDTLYDQKGRHYFKDCYIEGSIDFICGDGQSLYKNCQLHSIANPGSGSIAAQKRTGDTSTGFSFVGCTITGSGPIYLGR AWGPNSRIVFIYCNIADIIRPEGWHNWGDSSREKTVFYGQYKCTGAGADQSKRYGWSHELTESQAVALSSMTFIDG |
Full Sequence |
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Protein Sequence Length: 371 Download |
MATHRVANLQ LTLLCLWLHC GGLVLVTVGA AHADPKKTIN RDAVEKDFFS WVATMEQNHQ 60 AHITADTAEM TFQDFNGGTL AAANTLVVGA GGYKTVQSAV NDAASGGSRT IIQINSGTYR 120 EKVTVLKGKT ITFQGVNNPV IVYDDTAGSA GSTSNSASVT ILADNFIARG VTFKNSAPAP 180 PGGAVNKQAV ALRISGDKGA FYNCAFIGAQ DTLYDQKGRH YFKDCYIEGS IDFICGDGQS 240 LYKNCQLHSI ANPGSGSIAA QKRTGDTSTG FSFVGCTITG SGPIYLGRAW GPNSRIVFIY 300 CNIADIIRPE GWHNWGDSSR EKTVFYGQYK CTGAGADQSK RYGWSHELTE SQAVALSSMT 360 FIDGASWVQT * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 3.0e-82 | 89 | 368 | 292 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 5.0e-90 | 89 | 369 | 286 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 9.0e-98 | 89 | 367 | 285 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 6.0e-103 | 89 | 369 | 294 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-117 | 29 | 370 | 360 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001764253.1 | 0 | 89 | 368 | 1 | 283 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001777108.1 | 0 | 93 | 368 | 11 | 291 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778320.1 | 0 | 93 | 368 | 35 | 315 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778325.1 | 0 | 56 | 368 | 56 | 368 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785149.1 | 0 | 91 | 368 | 1 | 277 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 89 | 369 | 15 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-37 | 83 | 370 | 3 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 8e-23 | 93 | 353 | 18 | 325 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 8e-23 | 93 | 353 | 18 | 325 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 8e-23 | 93 | 353 | 18 | 325 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |