Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s67_89V6.3 |
Family | CE8 |
Protein Properties | Length: 444 Molecular Weight: 50018.4 Isoelectric Point: 8.5187 |
Chromosome | Chromosome/Scaffold: 67 Start: 679869 End: 682564 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 135 | 426 | 0 |
ITVSKFGKDDFITINAALDSIAEHERHRTVIHIREGVYEEKIVINASKPYITFRGDGLDKTIIQWGDQAGDFDDDDQMLKTYRSATVGVSSQYFIAENIQ FRNTAPQPPPGAVLRQAVALRITGDRAAFYNCAFYGFQDTLYDHKGRHYFENCYIQGSIDFVFGNGRSLYKNCHLHSEAKVFGSVTAQKRNESHMNTGFS FVDASITGRGPIYLGRAWGNFSRTVFSYTWMDNIVYPPGWSDFGFADRQKKVFYAQYNCRGPGAYSKERVAWVRELTAEEAKPFLSVHFING |
Full Sequence |
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Protein Sequence Length: 444 Download |
MISPVTSQLV FLELFFQLKE EPRSFSQLAS MGLLRRKLML LLLLVAFTFA AVIADASGED 60 DNVDTWLKFM AETSGSDADP DYDAETDGTP ASGSHYENSF VTERDNHTPD GTKSEATANG 120 MFVKFPKPKG KSRKITVSKF GKDDFITINA ALDSIAEHER HRTVIHIREG VYEEKIVINA 180 SKPYITFRGD GLDKTIIQWG DQAGDFDDDD QMLKTYRSAT VGVSSQYFIA ENIQFRNTAP 240 QPPPGAVLRQ AVALRITGDR AAFYNCAFYG FQDTLYDHKG RHYFENCYIQ GSIDFVFGNG 300 RSLYKNCHLH SEAKVFGSVT AQKRNESHMN TGFSFVDASI TGRGPIYLGR AWGNFSRTVF 360 SYTWMDNIVY PPGWSDFGFA DRQKKVFYAQ YNCRGPGAYS KERVAWVREL TAEEAKPFLS 420 VHFINGKTWL KKFLGKSKKS KRH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 7.0e-100 | 125 | 426 | 311 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 6.0e-103 | 132 | 426 | 297 | + pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-109 | 133 | 426 | 296 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 4.0e-110 | 124 | 426 | 304 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-139 | 125 | 426 | 306 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001756557.1 | 0 | 133 | 430 | 1 | 298 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001762576.1 | 0 | 121 | 443 | 1 | 323 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001764345.1 | 0 | 121 | 443 | 1 | 323 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002514210.1 | 0 | 144 | 431 | 95 | 382 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
RefSeq | XP_002531506.1 | 0 | 125 | 430 | 55 | 364 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 135 | 431 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99965e-42 | 137 | 431 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-28 | 143 | 418 | 42 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-21 | 144 | 418 | 14 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-21 | 144 | 418 | 14 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DC951008 | 233 | 212 | 444 | 0 |
CJ970256 | 254 | 74 | 327 | 0 |
DC957364 | 224 | 221 | 444 | 0 |
DC926804 | 215 | 212 | 426 | 0 |
DC942532 | 234 | 2 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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