Basic Information | |
---|---|
Species | Physcomitrella patens |
Cazyme ID | Pp1s67_89V6.4 |
Family | CE8 |
Protein Properties | Length: 426 Molecular Weight: 47878.9 Isoelectric Point: 8.7288 |
Chromosome | Chromosome/Scaffold: 67 Start: 679869 End: 682347 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 117 | 408 | 0 |
ITVSKFGKDDFITINAALDSIAEHERHRTVIHIREGVYEEKIVINASKPYITFRGDGLDKTIIQWGDQAGDFDDDDQMLKTYRSATVGVSSQYFIAENIQ FRNTAPQPPPGAVLRQAVALRITGDRAAFYNCAFYGFQDTLYDHKGRHYFENCYIQGSIDFVFGNGRSLYKNCHLHSEAKVFGSVTAQKRNESHMNTGFS FVDASITGRGPIYLGRAWGNFSRTVFSYTWMDNIVYPPGWSDFGFADRQKKVFYAQYNCRGPGAYSKERVAWVRELTAEEAKPFLSVHFING |
Full Sequence |
---|
Protein Sequence Length: 426 Download |
MLQPTISSWL ASMGLLRRKL MLLLLLVAFT FAAVIADASG EDDNVDTWLK FMAETSGSDA 60 DPDYDAETDG TPASGSHYEN SFVTERDNHT PDGTKSEATA NGMFVKFPKP KGKSRKITVS 120 KFGKDDFITI NAALDSIAEH ERHRTVIHIR EGVYEEKIVI NASKPYITFR GDGLDKTIIQ 180 WGDQAGDFDD DDQMLKTYRS ATVGVSSQYF IAENIQFRNT APQPPPGAVL RQAVALRITG 240 DRAAFYNCAF YGFQDTLYDH KGRHYFENCY IQGSIDFVFG NGRSLYKNCH LHSEAKVFGS 300 VTAQKRNESH MNTGFSFVDA SITGRGPIYL GRAWGNFSRT VFSYTWMDNI VYPPGWSDFG 360 FADRQKKVFY AQYNCRGPGA YSKERVAWVR ELTAEEAKPF LSVHFINGKT WLKKFLGKSK 420 KSKRH* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 2.0e-99 | 107 | 408 | 311 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-102 | 114 | 408 | 297 | + pectinesterase | ||
PLN02665 | PLN02665 | 6.0e-109 | 115 | 408 | 296 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 1.0e-109 | 106 | 408 | 304 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-139 | 107 | 408 | 306 | + pectinesterase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001756557.1 | 0 | 115 | 412 | 1 | 298 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001762576.1 | 0 | 103 | 425 | 1 | 323 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001764345.1 | 0 | 103 | 425 | 1 | 323 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002514210.1 | 0 | 126 | 413 | 95 | 382 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
RefSeq | XP_002531506.1 | 0 | 107 | 412 | 55 | 364 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 117 | 413 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99965e-42 | 118 | 413 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-28 | 125 | 400 | 42 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-21 | 126 | 400 | 14 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-21 | 126 | 400 | 14 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |