Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s92_82V6.1 |
Family | PL1 |
Protein Properties | Length: 324 Molecular Weight: 35236.1 Isoelectric Point: 9.838 |
Chromosome | Chromosome/Scaffold: 92 Start: 1013631 End: 1015329 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 41 | 240 | 0 |
IIFAYSMTIRLKNELMITSFKTIDGRGVTIRISGGAGLTLQRVNSVIIHGIAIHDIQATGPGRIMTSTAHTGNRGRCDGDAISIFSSKNIWIDHVYLARA ADGLIDVIRGSTDVTITNCYFTQHDKVMLLGASMNDDMDRNMRVTVAYNIFGPSLVQRMPRVRYGNVHVVNNDYTSGWGIYAIAGSEAPTILSQGNLFHA |
Full Sequence |
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Protein Sequence Length: 324 Download |
MSVRSWNGRI YVVTSASDDN PANPAPGTLR YAVTRLEPLW IIFAYSMTIR LKNELMITSF 60 KTIDGRGVTI RISGGAGLTL QRVNSVIIHG IAIHDIQATG PGRIMTSTAH TGNRGRCDGD 120 AISIFSSKNI WIDHVYLARA ADGLIDVIRG STDVTITNCY FTQHDKVMLL GASMNDDMDR 180 NMRVTVAYNI FGPSLVQRMP RVRYGNVHVV NNDYTSGWGI YAIAGSEAPT ILSQGNLFHA 240 GQGSKQVTKR INDGGPSFGD PRGWNWKSEG DVFYSGAYFS SVQMGWSAQS YSKTASCSPR 300 PASMVSRMVK TAGPLNCRKG SMC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-28 | 7 | 313 | 336 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-54 | 52 | 238 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-64 | 47 | 241 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001757625.1 | 0 | 7 | 323 | 41 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767336.1 | 0 | 7 | 323 | 35 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767377.1 | 0 | 7 | 323 | 49 | 365 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783970.1 | 0 | 7 | 323 | 64 | 380 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784519.1 | 0 | 7 | 323 | 56 | 372 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 8 | 313 | 38 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 8 | 313 | 38 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-20 | 46 | 238 | 55 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-16 | 50 | 238 | 121 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000008 | 50 | 238 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC426281 | 216 | 7 | 222 | 0 |
FC381033 | 192 | 7 | 198 | 0 |
ES827871 | 319 | 8 | 324 | 0 |
EC964189 | 313 | 14 | 324 | 0 |
FC366211 | 192 | 133 | 324 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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