Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s92_84V6.1 |
Family | PL1 |
Protein Properties | Length: 565 Molecular Weight: 60508.4 Isoelectric Point: 7.4715 |
Chromosome | Chromosome/Scaffold: 92 Start: 1017441 End: 1019982 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 282 | 481 | 0 |
IIFAYSMTIRLKNELMITSFKTIDGRGVTIRISGGAGLTLQRVNSVIIHGIAIHDIQATGPGRIMTSTAHTGNRGRCDGDAISIFSSKNIWIDHVYLARA ADGLIDVIRGSTDVTITNCYFTQHDKVMLLGASMNDDMDRNMRVTVAYNIFGPSLVQRMPRVRYGNVHVVNNDYTSGWGIYAIAGSEAPTILSQGNLFHA |
Full Sequence |
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Protein Sequence Length: 565 Download |
MLVSHSRGIK HRTALHRRAS TSLQVPRRVN AGARGGLGRR TRQTRNWYYT VGVMAKLAPL 60 IVVFLLVCVQ WQGAVSGTEL KPLNGGKSQP YDVDSITGET IYDDESSFAS SDPYNYADNG 120 GDNYQFSTSE SDGYSADPGT DEPVALPNGD GFAVSQDAPL SGVNSTTADG SSSVVSDDGF 180 DMVENDDDNS STASSDDQNM GAALASGGCS TGNPVDDCWK CNPNWANERQ KLATCAVGFG 240 RGATGGRNGR IYVVTSASDD NPANPAPGTL RYAVTRLEPL WIIFAYSMTI RLKNELMITS 300 FKTIDGRGVT IRISGGAGLT LQRVNSVIIH GIAIHDIQAT GPGRIMTSTA HTGNRGRCDG 360 DAISIFSSKN IWIDHVYLAR AADGLIDVIR GSTDVTITNC YFTQHDKVML LGASMNDDMD 420 RNMRVTVAYN IFGPSLVQRM PRVRYGNVHV VNNDYTSGWG IYAIAGSEAP TILSQGNLFH 480 AGQGSKQVTK RINDGGPSFG DPRGWNWKSE GDVFYSGAYF SSVQMGWSAQ SYSKTASCSP 540 RPASMVSRMV KTAGPLNCRK GSMC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-27 | 293 | 554 | 285 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-53 | 293 | 479 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-64 | 288 | 482 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001757625.1 | 0 | 209 | 564 | 2 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767336.1 | 0 | 214 | 564 | 1 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767377.1 | 0 | 200 | 564 | 1 | 365 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783970.1 | 0 | 186 | 564 | 2 | 380 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784519.1 | 0 | 209 | 564 | 17 | 372 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 213 | 554 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 213 | 554 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-21 | 241 | 479 | 19 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 291 | 479 | 121 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000002 | 291 | 479 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |