| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s96_140V6.2 |
| Family | GH33 |
| Protein Properties | Length: 332 Molecular Weight: 36635.9 Isoelectric Point: 6.5818 |
| Chromosome | Chromosome/Scaffold: 96 Start: 896445 End: 900562 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH33 | 14 | 311 | 1e-27 |
| EEFLFEDGKAPFPSCHASSIVELGSGTFLVAYFGGTHEGFSDVAIWTSRFEVGLWKPPALVDREPDVPAWNPVLFKMPDGELLIFYKIGEEVQKWSGFIK RSSDNGVTWSDREQLPPGILGPTKNKPLLIKDGRLLCGSSTESWNAWGAWMEVTADAGRTWAKHGPIHLSGTPLGIIQPVPFVTAHDTVRVLLRPSSMVG RICMATSQDAGLTWSFATPTELINCNCGFDGVKLHDGRLLILYNTTSRGILKVAISADDGLSWRDYLTLEDTEGCEFSYAAVILASDKHIHATYTYKR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 332 Download |
| MLISESRHAA IIKEEFLFED GKAPFPSCHA SSIVELGSGT FLVAYFGGTH EGFSDVAIWT 60 SRFEVGLWKP PALVDREPDV PAWNPVLFKM PDGELLIFYK IGEEVQKWSG FIKRSSDNGV 120 TWSDREQLPP GILGPTKNKP LLIKDGRLLC GSSTESWNAW GAWMEVTADA GRTWAKHGPI 180 HLSGTPLGII QPVPFVTAHD TVRVLLRPSS MVGRICMATS QDAGLTWSFA TPTELINCNC 240 GFDGVKLHDG RLLILYNTTS RGILKVAISA DDGLSWRDYL TLEDTEGCEF SYAAVILASD 300 KHIHATYTYK RRQIKHVVLQ PSELKHPQSL V* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.008 | 31 | 174 | 160 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| cd00260 | Sialidase | 0.0002 | 112 | 280 | 195 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 1.0e-28 | 24 | 325 | 360 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 7.0e-88 | 39 | 304 | 281 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18568.1 | 0 | 14 | 322 | 46 | 354 | unknown [Glycine max] |
| RefSeq | NP_001059779.1 | 0 | 10 | 322 | 107 | 419 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_001767689.1 | 0 | 4 | 331 | 31 | 358 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002324495.1 | 0 | 11 | 322 | 10 | 321 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531744.1 | 0 | 12 | 322 | 11 | 321 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| EL689016 | 286 | 21 | 306 | 0 |
| GO364404 | 255 | 73 | 327 | 0 |
| FF344386 | 261 | 51 | 311 | 0 |
| DV137355 | 268 | 41 | 308 | 0 |
| ES962106 | 260 | 33 | 292 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |