| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb0010s010920.1 |
| Family | GH3 |
| Protein Properties | Length: 773 Molecular Weight: 82481.3 Isoelectric Point: 5.1084 |
| Chromosome | Chromosome/Scaffold: 10 Start: 2352517 End: 2359239 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 76 | 326 | 0 |
| GVPRLGVPGYKWWNEALHGLATSGKGLHFDVVGGVRAATSFPQVLLTAAAFDDDLWFRIGQAIGREARALFNVGQAEGLTIWSPNVNIFRDPRWGRGQET PGEDPAVASRYAVAFVRGIQGNSSSSLLQTSACCKHATAYDLEDWNGVARYSFVARVTAQDLEDTFNPPFRSCVVEGKASCIMCAYTAINGVPACANTDL LTGTVRGDWGLDGYVASDCDAVAIMRDAQRYAPTPEDAVAVSLKAGLDIDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 773 Download |
| MAAPTLALLV TLAALHSAAV VLAGDPPFSC GPTSAEASEG LAFCDVTLSP AQRAADLVSR 60 LTPAEKIAQL GDQATGVPRL GVPGYKWWNE ALHGLATSGK GLHFDVVGGV RAATSFPQVL 120 LTAAAFDDDL WFRIGQAIGR EARALFNVGQ AEGLTIWSPN VNIFRDPRWG RGQETPGEDP 180 AVASRYAVAF VRGIQGNSSS SLLQTSACCK HATAYDLEDW NGVARYSFVA RVTAQDLEDT 240 FNPPFRSCVV EGKASCIMCA YTAINGVPAC ANTDLLTGTV RGDWGLDGYV ASDCDAVAIM 300 RDAQRYAPTP EDAVAVSLKA GLDIDCGSYI QQHATAAIQQ GKLTELDIDK ALVNLFAVRM 360 RLGHFDGDPR KNMYGALSAA DICTPEHRSL ALEAAQDGIV LLKNDGGILP LDRSTVTSAA 420 VIGPNSNDGM ALIANYFGPP CESTTPLQGL QSYVNNVRFL AGCSSAACDV AVTDQAVVLS 480 GSEDYVFLFM GLSQQQESEG KDRTSLLLPG MQQSLITAVA DASKRPVILV LLSGGPVDIT 540 FAQSNPKIGA ILWAGYPGQA GGLAIAKVLF GDHNPSGRLP MTWYPEDFTK VPMTDMRMRA 600 DPTSGYPGRS YRFYQGNAVY KFGYGLSYST FSSRLLYGTS MPALSSTVLA GLRETVTEEG 660 DRSYHIDDIG TDGCEQLKFP AMVEVQNHGP MDGKHSALMF LRWPNTNGGR PASQLIGFMS 720 QHLKAGETAN LRFDISPCEH FSRVRADGMK VIDIGSHFLT VDNHAIEIRF EA* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 2.0e-53 | 61 | 429 | 401 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-59 | 399 | 630 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 3.0e-62 | 73 | 358 | 290 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 2.0e-78 | 67 | 737 | 716 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 26 | 772 | 761 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX92971.1 | 0 | 24 | 772 | 23 | 771 | beta-D-xylosidase [Oryza sativa Japonica Group] |
| RefSeq | NP_001067726.1 | 0 | 26 | 772 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002489304.1 | 0 | 8 | 772 | 1 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
| RefSeq | XP_002489310.1 | 0 | 1 | 772 | 1 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
| RefSeq | XP_002489311.1 | 0 | 1 | 772 | 24 | 791 | hypothetical protein SORBIDRAFT_0010s012040 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 104 | 737 | 83 | 698 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 3u48_A | 0 | 104 | 737 | 83 | 698 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 3u4a_B | 0 | 104 | 737 | 83 | 698 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 3u4a_A | 0 | 104 | 737 | 83 | 698 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 4i3g_B | 1e-31 | 53 | 428 | 53 | 403 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
