| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g002540.1 |
| Family | CBM43 |
| Protein Properties | Length: 616 Molecular Weight: 63189.9 Isoelectric Point: 7.5184 |
| Chromosome | Chromosome/Scaffold: 1 Start: 2076018 End: 2078262 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 432 | 513 | 7e-35 |
| WCVAKSGLMDTTLQDAMDYACGMGGADCSAIQPMGACYNPNTLQAHASYAFNSYFQRNPSAASCDFGGAGMLVNVNPSSGTC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 616 Download |
| MAAASPLALT FFFCCILLLQ TICCSGVFVE LSYDSTQVKT LSSSVVTEYR VMVTAKQHAY 60 LFLKPFVCRE KPCRSEPLAA GGSFVNEVLG PNRRLNVSNI VVTATDTQLG ALRRTLQSFH 120 ASLGAAGLAA SVKVSPELSL SSLRVVAKDR DRARKKRWGK VMEFVRRTGS FVLVQVETEA 180 EANGEVAVDA EIEEAVAEVA ALLRAGAGVV LHVKSRAAPI AVAMAKLGGD TSREKRLLGV 240 LVDVSSPRRE LGEARATAHD EFSPVSNPAT TPVSNPVTVP ATNPVANPMA PGFVTVPSTN 300 PGNGFATNPN MPPLYPEPTT PATMPMPDPT TPTMPPVTVP SPFTNPVSAP TTMPGTVTNP 360 AAPAVTNPAT TPSQFPGTSP VTNPVTTYPQ QGGVGVGGGM PATQPVYQPP ATTMPGTGTV 420 QPGAPTMAGQ AWCVAKSGLM DTTLQDAMDY ACGMGGADCS AIQPMGACYN PNTLQAHASY 480 AFNSYFQRNP SAASCDFGGA GMLVNVNPSS GTCMYQTSSG FGAGYSPGTT GGGVPGGYTP 540 GMSGTGYNPA GGMSGTMGGG SGSTVLNANN PGGSMYGGYD NPTGLTAGSA PVSCGGWVVL 600 CLVWMVTFAF VKERV* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 9.0e-22 | 432 | 502 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 5.0e-38 | 432 | 515 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28117.1 | 0 | 1 | 615 | 1 | 587 | unknown [Zea mays] |
| GenBank | ACN28414.1 | 0 | 1 | 615 | 1 | 613 | unknown [Zea mays] |
| RefSeq | NP_001132166.2 | 0 | 129 | 615 | 31 | 487 | hypothetical protein LOC100193588 [Zea mays] |
| RefSeq | NP_001142611.1 | 0 | 1 | 615 | 1 | 610 | hypothetical protein LOC100274879 [Zea mays] |
| RefSeq | XP_002463588.1 | 0 | 1 | 615 | 1 | 615 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 2e-17 | 425 | 519 | 7 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
