| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g002550.1 |
| Family | GH28 |
| Protein Properties | Length: 460 Molecular Weight: 49776.2 Isoelectric Point: 6.5014 |
| Chromosome | Chromosome/Scaffold: 1 Start: 2088915 End: 2091624 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 394 | 0 |
| ADKGGAQLFVPAGRWLTGSFNLISHLTLSLDKDAVIIGSPDSSHWPVIDPLPSYGRGRELPGKRHQSLIFGLNLTDVIITGANGSIDGQGAIWWGWFRNH TLNYTRPHLVELMYSTNVVISNLTFKNSPFWNIHPVYCSQVLVQHVTILAPLNSPNTDGVSPDSSTNVCINHCYVRNGDDVIVIKSGWDEYGISFAQPSS NISISDITGETRGGAGIAFGSEMSGGISEVRAVGLRIVNSLHGIRIKTAPGRGGYVKNVYIADVSMDNVSMAIRITGNYGEHPDDKYDRTALPVISNITI KDVVGVNIGVAGILEGIQGDNFSNICLSNVSLSVQSAH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 460 Download |
| MVEIQWSTVS SIYCKDMPPN VYRPHSVTIT EFGAIGDGVT LNTKAFQNAI FYLNSFADKG 60 GAQLFVPAGR WLTGSFNLIS HLTLSLDKDA VIIGSPDSSH WPVIDPLPSY GRGRELPGKR 120 HQSLIFGLNL TDVIITGANG SIDGQGAIWW GWFRNHTLNY TRPHLVELMY STNVVISNLT 180 FKNSPFWNIH PVYCSQVLVQ HVTILAPLNS PNTDGVSPDS STNVCINHCY VRNGDDVIVI 240 KSGWDEYGIS FAQPSSNISI SDITGETRGG AGIAFGSEMS GGISEVRAVG LRIVNSLHGI 300 RIKTAPGRGG YVKNVYIADV SMDNVSMAIR ITGNYGEHPD DKYDRTALPV ISNITIKDVV 360 GVNIGVAGIL EGIQGDNFSN ICLSNVSLSV QSAHPWNCSL IEGYSNSVIP ESCEQLKSNC 420 RQTPICYDGS GSSAMHVQQP RHTSSTSRLL NPLLELASF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-24 | 23 | 398 | 416 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-27 | 24 | 363 | 356 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 2.0e-28 | 25 | 369 | 357 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-32 | 128 | 413 | 296 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-52 | 27 | 339 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28107.1 | 0 | 1 | 451 | 17 | 467 | unknown [Zea mays] |
| GenBank | ACN35154.1 | 0 | 1 | 414 | 17 | 430 | unknown [Zea mays] |
| RefSeq | NP_001051812.1 | 0 | 1 | 457 | 17 | 474 | Os03g0833800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151479.1 | 0 | 1 | 451 | 17 | 467 | polygalacturonase [Zea mays] |
| RefSeq | XP_002463589.1 | 0 | 1 | 459 | 1 | 459 | hypothetical protein SORBIDRAFT_01g002550 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4.00001e-41 | 25 | 411 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4.00001e-41 | 25 | 411 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4.00001e-41 | 25 | 411 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4.00001e-41 | 25 | 411 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-19 | 71 | 392 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO869614 | 319 | 5 | 323 | 0 |
| GO865721 | 300 | 46 | 345 | 0 |
| EB668408 | 277 | 93 | 369 | 0 |
| GO869571 | 297 | 5 | 300 | 0 |
| BM817163 | 277 | 59 | 335 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
