| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g004190.1 |
| Family | GH28 |
| Protein Properties | Length: 456 Molecular Weight: 49167 Isoelectric Point: 9.6894 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3363318 End: 3364904 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 83 | 419 | 0 |
| AWKAACASPRPAAVLVPNGRRYLLKVVTLRGPCKSTVAVTVKGTLVASPNRADWSDRDRRLWIVFRSINKLTLNGGGAIDGNGHKWWPYSCKINKGLPCK EAPTALSFHYCTNLRVDNLKIVNSQQIHMSVEDSTNVQLAKLSITAPGTSPNTDGIHITRSKDVRVTNCKIKTGDDCISIEDGTHKLHVSNVVCGPGHGI SIGSLGDDNSRAQVSGITIDSVQLHGTTNGARIKTYQGGSGYAKDITFQNMIMYNVKNPIIIDQNYCDKAKPCREQRSAVQISNVVFKNIRGTTITKDAI KMHCSKNVPCQGITLQNIDLKMQGGKGNTESTCQNAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 456 Download |
| MAPLPLPLLA LLFLSSTLEA VVGASNANDT SADGASYTCS SGSSRFLALP SSSSHSHRSV 60 FSLDRYGARG DGRHDDTRAL AAAWKAACAS PRPAAVLVPN GRRYLLKVVT LRGPCKSTVA 120 VTVKGTLVAS PNRADWSDRD RRLWIVFRSI NKLTLNGGGA IDGNGHKWWP YSCKINKGLP 180 CKEAPTALSF HYCTNLRVDN LKIVNSQQIH MSVEDSTNVQ LAKLSITAPG TSPNTDGIHI 240 TRSKDVRVTN CKIKTGDDCI SIEDGTHKLH VSNVVCGPGH GISIGSLGDD NSRAQVSGIT 300 IDSVQLHGTT NGARIKTYQG GSGYAKDITF QNMIMYNVKN PIIIDQNYCD KAKPCREQRS 360 AVQISNVVFK NIRGTTITKD AIKMHCSKNV PCQGITLQNI DLKMQGGKGN TESTCQNAKW 420 RKYGKVVPQP CTSKIMGTFG DLLEFLLASD SWSSW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-86 | 65 | 417 | 355 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-100 | 65 | 432 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-109 | 96 | 419 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-131 | 66 | 433 | 368 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-135 | 66 | 429 | 366 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001140231.1 | 0 | 13 | 440 | 27 | 447 | hypothetical protein LOC100272271 [Zea mays] |
| RefSeq | NP_001142092.1 | 0 | 56 | 435 | 88 | 480 | hypothetical protein LOC100274254 [Zea mays] |
| RefSeq | XP_002463688.1 | 0 | 21 | 431 | 10 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466241.1 | 0 | 1 | 455 | 1 | 455 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 60 | 434 | 74 | 451 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-25 | 157 | 402 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-22 | 153 | 417 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-22 | 153 | 417 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-22 | 153 | 417 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-22 | 153 | 417 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
