| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g004220.1 |
| Family | GH28 |
| Protein Properties | Length: 453 Molecular Weight: 47653.7 Isoelectric Point: 8.0147 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3393808 End: 3395771 |
| Description | polygalacturonase abscission zone A. thaliana |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 98 | 436 | 0 |
| WNAACASPQPAVLLVPGGKRYLLKLVTLSGPCKSSVTVTVKGTLVASPNRSDWSDEDRRHWIVFRQVDRLTVNGAGTVDGNGETWWKNSCKINKALPCKE APTALSFHFCTSLRVQDLNVVNSQQIHMSIEDCTGVQLTGLSITAPGTSPNTDGIHITRSNDVQVTNCKIKTGDDCLSIESGTHNLHVSQVVCGPGHGIS IGSLGDDNSRAEVSGITIDSVQLYGTTNGARIKTYQGGSGYAKDITFQNMVMYDVANPIIIDQNYCDKATAPCELQGSAVEVSNVVFKNIKGTTVTKDAI MLNCSRNVPCLGITLQNINLRMQGSNGKDAAESTCQNAR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 453 Download |
| MASPSRTNKP QLVLWPSLLT LLIFLPGALE ASAAGAGTGT STFSPSSISS SADGAAAAAT 60 GRRSLLAASP SSSVFSLDRY GACGDGSHDD TQALARAWNA ACASPQPAVL LVPGGKRYLL 120 KLVTLSGPCK SSVTVTVKGT LVASPNRSDW SDEDRRHWIV FRQVDRLTVN GAGTVDGNGE 180 TWWKNSCKIN KALPCKEAPT ALSFHFCTSL RVQDLNVVNS QQIHMSIEDC TGVQLTGLSI 240 TAPGTSPNTD GIHITRSNDV QVTNCKIKTG DDCLSIESGT HNLHVSQVVC GPGHGISIGS 300 LGDDNSRAEV SGITIDSVQL YGTTNGARIK TYQGGSGYAK DITFQNMVMY DVANPIIIDQ 360 NYCDKATAPC ELQGSAVEVS NVVFKNIKGT TVTKDAIMLN CSRNVPCLGI TLQNINLRMQ 420 GSNGKDAAES TCQNARWRKS GTVLPQPCTS KN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-93 | 79 | 452 | 376 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-106 | 79 | 449 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-114 | 102 | 435 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-135 | 80 | 452 | 373 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-143 | 80 | 446 | 369 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001140231.1 | 0 | 50 | 452 | 40 | 442 | hypothetical protein LOC100272271 [Zea mays] |
| RefSeq | NP_001142092.1 | 0 | 58 | 450 | 76 | 478 | hypothetical protein LOC100274254 [Zea mays] |
| RefSeq | XP_002463688.1 | 0 | 34 | 448 | 11 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466241.1 | 0 | 50 | 451 | 30 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 1 | 452 | 1 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-27 | 169 | 417 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 5e-21 | 80 | 420 | 26 | 341 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1hg8_A | 3e-18 | 110 | 390 | 26 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 5e-18 | 93 | 390 | 9 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 5e-18 | 93 | 390 | 9 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
