y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb01g004230.1 |
Family | GH28 |
Protein Properties | Length: 437 Molecular Weight: 46751.5 Isoelectric Point: 10.0544 |
Chromosome | Chromosome/Scaffold: 1 Start: 3401564 End: 3403064 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 420 | 0 |
EAACASPRPAVVLVPNGGRYLLKLVTLRGPCKSSVTLTVKGTLVASPDRADWSDKDRRHWIVFRRVNKLTVNGGGTIDGNGQKWWPHSCKINKTLPCKVA PTALSFHHCTNLRVDNLKIMNGQQMHMSVEDCTDVVLARLSITAPARSPNTDGIHITRSKNVRVTNCKIKTGDDCMSIENGTHNLHVSKVVCGPGHGISI GSLGDDNSRAEVSGITIDSVQLYGTTNGARIKTYQGGSGYAKDITFQNMIMYGVKNPIIIDQNYCDKATPCAEQRSAVRVSNVVFKNIRGTTITKHAIKM NCSKNVPCQGITLKNIDMKLKGGKGNIDSTCQNAK |
Full Sequence |
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Protein Sequence Length: 437 Download |
MASLLALLLV SGASNGTSSD GTSYLRSSGA SGPAAAPRSS SRSLAMAMAM AMASSSHHQS 60 VFSLDSYGAR GDGRHDDTPA LEKAWEAACA SPRPAVVLVP NGGRYLLKLV TLRGPCKSSV 120 TLTVKGTLVA SPDRADWSDK DRRHWIVFRR VNKLTVNGGG TIDGNGQKWW PHSCKINKTL 180 PCKVAPTALS FHHCTNLRVD NLKIMNGQQM HMSVEDCTDV VLARLSITAP ARSPNTDGIH 240 ITRSKNVRVT NCKIKTGDDC MSIENGTHNL HVSKVVCGPG HGISIGSLGD DNSRAEVSGI 300 TIDSVQLYGT TNGARIKTYQ GGSGYAKDIT FQNMIMYGVK NPIIIDQNYC DKATPCAEQR 360 SAVRVSNVVF KNIRGTTITK HAIKMNCSKN VPCQGITLKN IDMKLKGGKG NIDSTCQNAK 420 WRKSGFVHPQ PCIATK* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-92 | 61 | 433 | 375 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-109 | 57 | 432 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-117 | 89 | 420 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-144 | 60 | 430 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-144 | 59 | 434 | 376 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001140231.1 | 0 | 9 | 436 | 32 | 442 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | NP_001142092.1 | 0 | 58 | 432 | 89 | 476 | hypothetical protein LOC100274254 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 1 | 436 | 1 | 436 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 7 | 434 | 18 | 433 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 61 | 432 | 74 | 448 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 156 | 403 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 4e-22 | 66 | 412 | 25 | 347 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 5e-20 | 154 | 376 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-20 | 154 | 376 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-20 | 154 | 376 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |