| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g005610.1 |
| Family | CBM43 |
| Protein Properties | Length: 496 Molecular Weight: 53620.9 Isoelectric Point: 4.573 |
| Chromosome | Chromosome/Scaffold: 1 Start: 4581252 End: 4583579 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 376 | 459 | 2e-24 |
| WCVVNTNAGSDAMEKLADNINYACTFADCTALGYGSTCGGMDSNGNASYAFNAFFQVQNQKDEACGFQGLAVPTQTDPSTATCN | |||
| GH17 | 31 | 353 | 0 |
| LGMNWGTQATHPLPPKIVAQLLRDNGIKKVKLFDADQETLSALAGTGIEVMVAIPNVMLDTMTDYDTAKEWVRRNVSRYNFDGGVTIKYVAVGNEPFLAA YNGTFDKVTFPALQNIQNALNEAGLGDTIKATVPLNADVYMSPKDNPVPSAGRWRTDITDLMTQMVQFLSNNSAPFTVNIYPFISLFLNDDFPVNFAFFD GDATPLVDPGTGVSYTNVFDANFDTLVAALKSVGHGDMPIVVGEVGWPTDGDKHATSAYAQRFYNGLLKRLAANAGTPARPNQYIEVYLFGLLDEDVKSV APGNFERHWGILRYDGQPKYPMD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 496 Download |
| MANLLPMLRP WLCLLAAMAA VSAPWSPADA LGMNWGTQAT HPLPPKIVAQ LLRDNGIKKV 60 KLFDADQETL SALAGTGIEV MVAIPNVMLD TMTDYDTAKE WVRRNVSRYN FDGGVTIKYV 120 AVGNEPFLAA YNGTFDKVTF PALQNIQNAL NEAGLGDTIK ATVPLNADVY MSPKDNPVPS 180 AGRWRTDITD LMTQMVQFLS NNSAPFTVNI YPFISLFLND DFPVNFAFFD GDATPLVDPG 240 TGVSYTNVFD ANFDTLVAAL KSVGHGDMPI VVGEVGWPTD GDKHATSAYA QRFYNGLLKR 300 LAANAGTPAR PNQYIEVYLF GLLDEDVKSV APGNFERHWG ILRYDGQPKY PMDLSGQGQN 360 TMLVPASGVE YLPRTWCVVN TNAGSDAMEK LADNINYACT FADCTALGYG STCGGMDSNG 420 NASYAFNAFF QVQNQKDEAC GFQGLAVPTQ TDPSTATCNF TIQIATTSAA HRRPLGVALF 480 VLAQLVLNLL LLLLH* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00925 | GTP_cyclohydro2 | 0.002 | 47 | 85 | 39 | + GTP cyclohydrolase II. GTP cyclohydrolase II catalyzes the first committed step in the biosynthesis of riboflavin. | ||
| COG5309 | COG5309 | 6.0e-5 | 260 | 345 | 90 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 4.0e-18 | 375 | 447 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-30 | 375 | 460 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-68 | 31 | 353 | 325 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG29689.1 | 0 | 27 | 470 | 17 | 458 | glucan endo-1,3-beta-glucosidase 5 precursor [Zea mays] |
| RefSeq | NP_001051526.1 | 0 | 28 | 473 | 31 | 472 | Os03g0792800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130924.1 | 0 | 27 | 470 | 18 | 459 | hypothetical protein LOC100192029 [Zea mays] |
| RefSeq | XP_002459388.1 | 0 | 27 | 470 | 25 | 465 | hypothetical protein SORBIDRAFT_02g003910 [Sorghum bicolor] |
| RefSeq | XP_002463758.1 | 0 | 1 | 473 | 1 | 473 | hypothetical protein SORBIDRAFT_01g005610 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 31 | 355 | 2 | 316 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 3f55_C | 0 | 31 | 355 | 2 | 316 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 3f55_B | 0 | 31 | 355 | 2 | 316 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 3f55_A | 0 | 31 | 355 | 2 | 316 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 3em5_D | 0 | 31 | 355 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
