| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g012210.1 |
| Family | CBM22 |
| Protein Properties | Length: 749 Molecular Weight: 81870.4 Isoelectric Point: 5.1644 |
| Chromosome | Chromosome/Scaffold: 1 Start: 11219754 End: 11222687 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 24 | 162 | 2e-31 |
| NIILNPEFDDGLDNWAGNGCKIELHDSLDDGKVLPANGKYFVAATGRTDTWNGVQQDVTARLQRKLLYEATATVRLHSSAAAVAPCEVRATLGVQTADGR QQYLGIGKSQVSDKEWVQLQGKILLNSTVAKASIYIEGP | |||
| CBM22 | 197 | 339 | 7.2e-40 |
| NIIQNCNLDDGLNGWFPLGPCTLSVHDGGPRVLPPMAQDSLALGDEPLNGKHIHVTNRTQTWMGPAQIITDKLTLYATYQVSAWVRVGGAAAPQTINIAF AVDSQWINGGQVMARDERWYEVGGALRVETKPASRVMVYVQGP | |||
| GH10 | 405 | 688 | 0 |
| VSNSFPLGACIMRTNMDNEDFVDFFTKNFNWAVFGNELKWYWTEPQRGQMNYADADDLLRLCSDHGMCVRGHCIFWEVDSAVQQWVKTLSTDDLSAAVSS RINGLLTRYKGKFKHYDVNNEMLHGSFYQDKLGKDIRAAMFKTASELDPDALLFVNDYNVEGMCDTHATPEAYIQQIVGLQEQGAPVGGVGLQGHVSNPV GPVIRSVLDRLAVLGLPIWFTEVDVSSANEHVRADDLEVMLREAYAHPAVEGVMLWGFWELFMSRDDAHLVDAEGQVNEAGRRL | |||
| Full Sequence |
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| Protein Sequence Length: 749 Download |
| MAAIGGDDAA GLVVVVGDGA GDDNIILNPE FDDGLDNWAG NGCKIELHDS LDDGKVLPAN 60 GKYFVAATGR TDTWNGVQQD VTARLQRKLL YEATATVRLH SSAAAVAPCE VRATLGVQTA 120 DGRQQYLGIG KSQVSDKEWV QLQGKILLNS TVAKASIYIE GPPAGVDVLL DSLVVKHAQK 180 APPAPAPDFE NLEYGANIIQ NCNLDDGLNG WFPLGPCTLS VHDGGPRVLP PMAQDSLALG 240 DEPLNGKHIH VTNRTQTWMG PAQIITDKLT LYATYQVSAW VRVGGAAAPQ TINIAFAVDS 300 QWINGGQVMA RDERWYEVGG ALRVETKPAS RVMVYVQGPD AGVDLMVAGL QVFPVDRKAR 360 VKHLRRLTDK VRKRDVVLKV TTGADGAAAA VKDAADGVEV RVRQVSNSFP LGACIMRTNM 420 DNEDFVDFFT KNFNWAVFGN ELKWYWTEPQ RGQMNYADAD DLLRLCSDHG MCVRGHCIFW 480 EVDSAVQQWV KTLSTDDLSA AVSSRINGLL TRYKGKFKHY DVNNEMLHGS FYQDKLGKDI 540 RAAMFKTASE LDPDALLFVN DYNVEGMCDT HATPEAYIQQ IVGLQEQGAP VGGVGLQGHV 600 SNPVGPVIRS VLDRLAVLGL PIWFTEVDVS SANEHVRADD LEVMLREAYA HPAVEGVMLW 660 GFWELFMSRD DAHLVDAEGQ VNEAGRRLLQ LKREWLTHSH GHADENGEYK FRGHHGEYHV 720 DVTTPTGKVS QTFTVDKDDA PLVLNIKV* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-11 | 196 | 341 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 2.0e-20 | 24 | 164 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-34 | 440 | 662 | 245 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-78 | 406 | 692 | 307 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-81 | 442 | 688 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY91350.1 | 0 | 3 | 748 | 2 | 756 | hypothetical protein OsI_12971 [Oryza sativa Indica Group] |
| RefSeq | NP_001050876.1 | 0 | 3 | 748 | 2 | 756 | Os03g0672900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002283550.1 | 0 | 20 | 746 | 263 | 979 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002283550.1 | 5e-32 | 22 | 352 | 92 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002466685.1 | 0 | 1 | 748 | 1 | 748 | hypothetical protein SORBIDRAFT_01g012210 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 5e-32 | 411 | 662 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 5e-32 | 411 | 662 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1nq6_A | 3e-29 | 411 | 683 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1e0v_A | 7e-29 | 411 | 661 | 16 | 267 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 8e-29 | 411 | 661 | 16 | 267 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EL428755 | 280 | 409 | 688 | 0 |
| EX570690 | 295 | 455 | 749 | 0 |
| HO789518 | 279 | 448 | 726 | 0 |
| EX570691 | 281 | 455 | 735 | 0 |
| GR184067 | 268 | 411 | 678 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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