| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g012380.1 |
| Family | CBM43 |
| Protein Properties | Length: 476 Molecular Weight: 48591.6 Isoelectric Point: 4.7448 |
| Chromosome | Chromosome/Scaffold: 1 Start: 11437049 End: 11439968 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 386 | 468 | 4.6e-33 |
| WCVARDGASDADLQADLDYACSQLGVDCGAIQPGGACFEPNTVRAHAAYAMNQLYQAAGRHPWNCDFRASATLTSENPSYGAC | |||
| GH17 | 37 | 354 | 0 |
| IGVNYGEVADNLPSPDETAKLLKSTSISKVRLYGVDAGLIRALAGSGISVVVGVANGDIPSLAADPAAASRWLAANVLPFVPATTISAVAVGNEVLESGD ATLAAALLPAMQNLRAAALAAGDGAAGIRFSTVNTMGVMAQSDPPSTGAFHPDVAPQLQQILAFLSRTGAPFMINPYPWFAYQSDPRPETLAFCLFQPNA GRVDGGSKIRYTNMFDAQLDAVKSALVRAGYGSVDIVVAETGWPTKGDAGEPGATAENARAYVSNLVAHLRSGAGTPLMPGRSVETYLFALYDEDLKPGP TSERSFGLYHTDLTMAYD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MGMGAEARRK PAAAAALLPI WLICLVCASR AAAEPYIGVN YGEVADNLPS PDETAKLLKS 60 TSISKVRLYG VDAGLIRALA GSGISVVVGV ANGDIPSLAA DPAAASRWLA ANVLPFVPAT 120 TISAVAVGNE VLESGDATLA AALLPAMQNL RAAALAAGDG AAGIRFSTVN TMGVMAQSDP 180 PSTGAFHPDV APQLQQILAF LSRTGAPFMI NPYPWFAYQS DPRPETLAFC LFQPNAGRVD 240 GGSKIRYTNM FDAQLDAVKS ALVRAGYGSV DIVVAETGWP TKGDAGEPGA TAENARAYVS 300 NLVAHLRSGA GTPLMPGRSV ETYLFALYDE DLKPGPTSER SFGLYHTDLT MAYDAGLTSS 360 SSAGAAGGGG GGGGSAAAQP KQGGGWCVAR DGASDADLQA DLDYACSQLG VDCGAIQPGG 420 ACFEPNTVRA HAAYAMNQLY QAAGRHPWNC DFRASATLTS ENPSYGACVY TGGAQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-7 | 29 | 348 | 332 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-21 | 386 | 457 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-39 | 386 | 470 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-85 | 37 | 354 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN26761.1 | 0 | 147 | 475 | 1 | 323 | unknown [Zea mays] |
| GenBank | EAY91326.1 | 0 | 3 | 473 | 1 | 463 | hypothetical protein OsI_12942 [Oryza sativa Indica Group] |
| RefSeq | NP_001050864.1 | 0 | 3 | 473 | 1 | 463 | Os03g0669300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148381.1 | 0 | 17 | 475 | 12 | 461 | glucan endo-1,3-beta-glucosidase 7 [Zea mays] |
| RefSeq | XP_002466692.1 | 0 | 1 | 475 | 1 | 475 | hypothetical protein SORBIDRAFT_01g012380 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 37 | 358 | 2 | 316 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 3f55_C | 0 | 37 | 358 | 2 | 316 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 3f55_B | 0 | 37 | 358 | 2 | 316 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 3f55_A | 0 | 37 | 358 | 2 | 316 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 3em5_D | 0 | 37 | 358 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
