| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g012900.1 |
| Family | CBM43 |
| Protein Properties | Length: 494 Molecular Weight: 52380.1 Isoelectric Point: 4.6056 |
| Chromosome | Chromosome/Scaffold: 1 Start: 11957671 End: 11960587 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 377 | 458 | 1.7e-24 |
| WCVVNPNAQDMSKIGDGVTYACTFSDCTSLGYGSSCNGLDAGGNASYAFNMYFQVQNQVEGSCDFQGLAVPTAQNPSTDACN | |||
| GH17 | 31 | 353 | 0 |
| LGVNWGTMATHRLPPGTVVRMLEDNGIRKVKLFDADAGPMDALAGTSVEVMVAIPNNMLDMMTDYGTARDWVHQNVSRYNFDGGVNIKYVAVGNEPFLSS FNGTFLNVTLPALQNIQRALNDAGLGDSIKATVPLNADVYNSPTESPYPSAGRFRSDIADLMTEIVQFLNQSGAPFTVNIYPFLSLYDSDDFPLDYAFFD GTSSPVVDAGNGIRYTNVFDANFDTLVSALAAAGVGGLPVVVGEVGWPTDGDKHATAAYAQKFYAGLLRKLAANAGTPLRPGQYIEVYLFSLVDEDAKSV APGNFERHWGIMRYDGQPKYGMD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MAAASYDRLA VAASLLVAAV VVAGLPAAGA LGVNWGTMAT HRLPPGTVVR MLEDNGIRKV 60 KLFDADAGPM DALAGTSVEV MVAIPNNMLD MMTDYGTARD WVHQNVSRYN FDGGVNIKYV 120 AVGNEPFLSS FNGTFLNVTL PALQNIQRAL NDAGLGDSIK ATVPLNADVY NSPTESPYPS 180 AGRFRSDIAD LMTEIVQFLN QSGAPFTVNI YPFLSLYDSD DFPLDYAFFD GTSSPVVDAG 240 NGIRYTNVFD ANFDTLVSAL AAAGVGGLPV VVGEVGWPTD GDKHATAAYA QKFYAGLLRK 300 LAANAGTPLR PGQYIEVYLF SLVDEDAKSV APGNFERHWG IMRYDGQPKY GMDLSGQGRT 360 NTALVAARGV QYLPRQWCVV NPNAQDMSKI GDGVTYACTF SDCTSLGYGS SCNGLDAGGN 420 ASYAFNMYFQ VQNQVEGSCD FQGLAVPTAQ NPSTDACNFT IQITPSAAGR RRRAIAATAL 480 LLLVLLAALH VAP* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 7.0e-17 | 376 | 446 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-30 | 376 | 459 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-58 | 34 | 353 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAT42176.1 | 0 | 1 | 472 | 1 | 472 | putative 3-glucanase [Zea mays] |
| RefSeq | NP_001050810.1 | 0 | 27 | 472 | 23 | 468 | Os03g0656800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001051526.1 | 0 | 26 | 472 | 29 | 472 | Os03g0792800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147672.1 | 0 | 1 | 466 | 1 | 466 | glucan endo-1,3-beta-glucosidase 5 [Zea mays] |
| RefSeq | XP_002466725.1 | 0 | 1 | 469 | 1 | 469 | hypothetical protein SORBIDRAFT_01g012900 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 31 | 355 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 3f55_C | 0 | 31 | 355 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 3f55_B | 0 | 31 | 355 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 3f55_A | 0 | 31 | 355 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 3em5_D | 0 | 31 | 355 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
