| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g019460.1 |
| Family | AA3 |
| Protein Properties | Length: 588 Molecular Weight: 62989.6 Isoelectric Point: 7.5389 |
| Chromosome | Chromosome/Scaffold: 1 Start: 20887243 End: 20889232 |
| Description | fatty alcohol oxidase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| AA3 | 69 | 580 | 1.4013e-45 |
| ASDANHHTVQCDAVIVGSGCGGGVAAAVLASAGYKVVVVEKGDYFTADDYSSIEGPSMERLFERGGIFCTSNVTTMIFTGATVGGGSAVNWSACIRTPEE VTQEWAREHGLPVFASPGYVQAMDAVCARLAVTDGCREEGFQNKVVRRGCEALGLCADAVPRNSSDGHFCGSCNFGCPTGDKRGTDTTWLVDAVARGAVI LTGCKAEHFVFEKNRSGVSGRGKKCVGLVATCASNGVTKKLRIEAKVSIAACGALMTPPLLRNSGLKNRHIGSNLHLHPVSMAWGYFPENKQDPPLPGKC FEGGIITSMHRVTERTIIETPALGPGAFAAMVPWESGRDMKERMRRYSRTAHAFALVRDRGVGYVDGEGRVRFTPSREDIEELRNGLRRTLRILVAAGAV EVGTHRSDGLRLRCKGLRDEDLEAFLDEVTIEKGPMHSRTDKWALHCSAHQMGSCRMGSSPKDGAVDGRGESWEAEGLYVCDGSLLPTAVGVNPMITIQS IAFCLSKGIAET | |||
| Full Sequence |
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| Protein Sequence Length: 588 Download |
| MQVNENSENP YWKAIGYSVY EPREDVTRTE ATPSPSRPLD VGVVETRLLN DNALLRSLVG 60 RGLTVKPAAS DANHHTVQCD AVIVGSGCGG GVAAAVLASA GYKVVVVEKG DYFTADDYSS 120 IEGPSMERLF ERGGIFCTSN VTTMIFTGAT VGGGSAVNWS ACIRTPEEVT QEWAREHGLP 180 VFASPGYVQA MDAVCARLAV TDGCREEGFQ NKVVRRGCEA LGLCADAVPR NSSDGHFCGS 240 CNFGCPTGDK RGTDTTWLVD AVARGAVILT GCKAEHFVFE KNRSGVSGRG KKCVGLVATC 300 ASNGVTKKLR IEAKVSIAAC GALMTPPLLR NSGLKNRHIG SNLHLHPVSM AWGYFPENKQ 360 DPPLPGKCFE GGIITSMHRV TERTIIETPA LGPGAFAAMV PWESGRDMKE RMRRYSRTAH 420 AFALVRDRGV GYVDGEGRVR FTPSREDIEE LRNGLRRTLR ILVAAGAVEV GTHRSDGLRL 480 RCKGLRDEDL EAFLDEVTIE KGPMHSRTDK WALHCSAHQM GSCRMGSSPK DGAVDGRGES 540 WEAEGLYVCD GSLLPTAVGV NPMITIQSIA FCLSKGIAET MAQGKGQ* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 0.0005 | 446 | 561 | 117 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 0.0003 | 488 | 570 | 87 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 6.0e-21 | 438 | 570 | 133 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 5.0e-25 | 148 | 571 | 475 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 2.0e-88 | 126 | 348 | 226 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL31021.1 | 0 | 1 | 587 | 1 | 589 | AC078948_5 putative alcohol oxidase [Oryza sativa Japonica Group] |
| GenBank | ACR36691.1 | 0 | 3 | 587 | 196 | 781 | unknown [Zea mays] |
| RefSeq | NP_001064841.1 | 0 | 2 | 587 | 7 | 594 | Os10g0475000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001142399.1 | 0 | 2 | 587 | 87 | 673 | hypothetical protein LOC100274574 [Zea mays] |
| RefSeq | XP_002464494.1 | 0 | 1 | 587 | 1 | 587 | hypothetical protein SORBIDRAFT_01g019460 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1naa_B | 0.0000001 | 80 | 570 | 4 | 527 | A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam |
| PDB | 1naa_A | 0.0000001 | 80 | 570 | 4 | 527 | A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam |
| PDB | 1kdg_B | 0.0000002 | 80 | 570 | 9 | 532 | A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase |
| PDB | 1kdg_A | 0.0000002 | 80 | 570 | 9 | 532 | A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase |
| PDB | 3cox_A | 0.00006 | 471 | 570 | 393 | 494 | A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO794753 | 582 | 2 | 578 | 0 |
| DV520496 | 291 | 136 | 424 | 0 |
| EE172636 | 273 | 159 | 429 | 0 |
| CK208913 | 321 | 143 | 463 | 0 |
| CT860754 | 301 | 268 | 568 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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