| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g019470.1 |
| Family | AA3 |
| Protein Properties | Length: 775 Molecular Weight: 83917.6 Isoelectric Point: 7.848 |
| Chromosome | Chromosome/Scaffold: 1 Start: 20915474 End: 20926233 |
| Description | Long-chain fatty alcohol dehydrogenase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 261 | 764 | 1.12104e-44 |
| RCDVVIVGSGCGGGVAAAVLASAGHKVVVIEKGDYFTAEDYSSVEGPSMERLYEKGGIFCTTNVTTILFTGTTVGGGSAINWSASIRTPEEVRQEWAREH GLPVFASPGYVQAMDAVCARLAVTDGCRDEGFQNKVVRRGCEALALRADAVPRNSSEDHFCGSCYIGCPTGEKRGTDTTWLVDAVARGAVILTGCKAERF ILESNSNSSSGRKGRKCVGVVARCMSNGITKELRIEAKVSISGCGALMTPPLLRNSGLKNRHIGRNLHLHPVSMAWGYFPENKQQAQITGKCFEGGIITS MHRVTERTIIETPALGPGCFASLMPWESGRDMKERMRRYARTAHAFALVRDRGAGTVDGEGRVRYTPNRADAEELRNGLRRALRILVAAGAAEVGTHRSD GFGLRCNGGVRDDELEAFLDEVTVAEGPMRPGPDKWALHCSAHQMGSCRMGSSPKDGAVDGRGESWEAEGLYVCDGSLLPTAVGVNPMITIQSIAFCLSK GIAE | |||
| Full Sequence |
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| Protein Sequence Length: 775 Download |
| MAAQEEAKAA TRRRRRGHPL LRGCRRERYT HGLHLAQMEA LRAMCGALIP SLPLPPVTER 60 SLHGDSSDGG ERKDLERFYL ASAADGTIPE EVAELVTRCV WEAVVLVNVV LWILSTKVGT 120 LALCGRLCIS GGKFPYVRKF ADMPVERREQ ALTQWNRTRW LFPLKITFVV VKILSHYAFY 180 TTINENSDDN PSWKAIGYSV PHGEEETRED ETEAAPSPRP LDNGIVETKA LDDTALLTSL 240 MARGLEVKPA APPANAYHTV RCDVVIVGSG CGGGVAAAVL ASAGHKVVVI EKGDYFTAED 300 YSSVEGPSME RLYEKGGIFC TTNVTTILFT GTTVGGGSAI NWSASIRTPE EVRQEWAREH 360 GLPVFASPGY VQAMDAVCAR LAVTDGCRDE GFQNKVVRRG CEALALRADA VPRNSSEDHF 420 CGSCYIGCPT GEKRGTDTTW LVDAVARGAV ILTGCKAERF ILESNSNSSS GRKGRKCVGV 480 VARCMSNGIT KELRIEAKVS ISGCGALMTP PLLRNSGLKN RHIGRNLHLH PVSMAWGYFP 540 ENKQQAQITG KCFEGGIITS MHRVTERTII ETPALGPGCF ASLMPWESGR DMKERMRRYA 600 RTAHAFALVR DRGAGTVDGE GRVRYTPNRA DAEELRNGLR RALRILVAAG AAEVGTHRSD 660 GFGLRCNGGV RDDELEAFLD EVTVAEGPMR PGPDKWALHC SAHQMGSCRM GSSPKDGAVD 720 GRGESWEAEG LYVCDGSLLP TAVGVNPMIT IQSIAFCLSK GIAETLAHGK DKGQ* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03970 | Rv0697 | 8.0e-6 | 666 | 755 | 94 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 3.0e-21 | 622 | 755 | 134 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 1.0e-25 | 331 | 756 | 475 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 2.0e-85 | 309 | 532 | 227 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36691.1 | 0 | 6 | 774 | 24 | 783 | unknown [Zea mays] |
| DDBJ | BAH94933.1 | 0 | 16 | 768 | 10 | 760 | Os10g0474966 [Oryza sativa Japonica Group] |
| RefSeq | NP_001142399.1 | 0 | 95 | 774 | 1 | 675 | hypothetical protein LOC100274574 [Zea mays] |
| RefSeq | XP_002464495.1 | 0 | 1 | 774 | 1 | 774 | hypothetical protein SORBIDRAFT_01g019470 [Sorghum bicolor] |
| RefSeq | XP_002464496.1 | 0 | 38 | 774 | 1 | 732 | hypothetical protein SORBIDRAFT_01g019480 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ljp_B | 0.0001 | 451 | 754 | 226 | 518 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |
| PDB | 3ljp_A | 0.0001 | 451 | 754 | 226 | 518 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |
| PDB | 3nne_H | 0.0003 | 451 | 754 | 226 | 518 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
| PDB | 3nne_G | 0.0003 | 451 | 754 | 226 | 518 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
| PDB | 3nne_F | 0.0003 | 451 | 754 | 226 | 518 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794753 | 738 | 36 | 766 | 0 |
| DV520496 | 291 | 319 | 608 | 0 |
| EG400359 | 281 | 478 | 758 | 0 |
| DV856521 | 282 | 488 | 769 | 0 |
| CK208913 | 356 | 326 | 681 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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