| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g019510.2 |
| Family | GH116 |
| Protein Properties | Length: 975 Molecular Weight: 109308 Isoelectric Point: 7.2417 |
| Chromosome | Chromosome/Scaffold: 1 Start: 21074154 End: 21082667 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH116 | 557 | 919 | 0 |
| GKFLYLEGVEYIMWNTYDVHFYASFALLDLFPKIELSIQRDFANAVLYEDRRKVKFLADGTSGIRKVKGAVPHDLGTHDPWHEMNAYNIHDTSKWKDLNP KFVLQIYRDFAATGDMQFGRDVWPAVCAAMDYMDQFDRDGDGLIENDGFPDQTYDAWTVHGISAYCGCLWLAALQAAATMAHRLGDRHFAEKYKLKFIKA KAVYEAKLWNGSYFNYDSGTSSNSRSIQADQLAGQWYTASSGLPPLFDEHKIRTALQKIFEFNVMKVKGGRMGAVNGMTPKGKVDETCMQSREIWTGVTY AVAANMLLHGMEHQGFTTAEGIFIAGWSEEGYGYWFQTPEGWTTDGHYRSLVYMRPLAIWAIQ | |||
| Full Sequence |
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| Protein Sequence Length: 975 Download |
| MVSGHIFHCR KNSWPAEEYV GRTALQLLDF DGGAPPEQAW RRRLNSHANI LKEFSVTFME 60 AMRMMSLGLR LWSYVREEAS HGRKAPIDPF TKERCKPSAS QGVPLGGMGS GSISRGFRGE 120 FKNWHIIPGL CESSPVMENQ FSIFVSRDGG NKKYSSVLAP GHHEGLKKNS DSGISSWDWN 180 LSGQHSTYHA LFPRAWTVYD GEPDPDLKIS CRQISPFIPH DYKDSSLPTS VFVYTLVNTG 240 RDRAKVSLLM TWANSIGGFS HNSGGHYNEP FIAEDGVSGV LLHHKTAKDN PPVTFAVAAC 300 ETQNVNVTVL PVFGLSGENH VSAKEMWNTM QQNGHFDREN FSAGSSMPSS PGQKLCAAVS 360 ASTWVEPHGR CTVVFALAWS SPKVKFQKGC TYNRRYTQFY GTSEKSAVNL VHDALTKYKL 420 WEEEIEKWQN PILKDERLPE WYKFTLFNEL YFLVAGGTVW TDGQPPAIDE KNSPGSIQQK 480 SSKRGTKDTK QGSVKDNHVN LTVEQVPHGG QMTNSDDHSV SKFAAVHGSQ MQEQVNGLKS 540 EEPIPYLISK DGPEHVGKFL YLEGVEYIMW NTYDVHFYAS FALLDLFPKI ELSIQRDFAN 600 AVLYEDRRKV KFLADGTSGI RKVKGAVPHD LGTHDPWHEM NAYNIHDTSK WKDLNPKFVL 660 QIYRDFAATG DMQFGRDVWP AVCAAMDYMD QFDRDGDGLI ENDGFPDQTY DAWTVHGISA 720 YCGCLWLAAL QAAATMAHRL GDRHFAEKYK LKFIKAKAVY EAKLWNGSYF NYDSGTSSNS 780 RSIQADQLAG QWYTASSGLP PLFDEHKIRT ALQKIFEFNV MKVKGGRMGA VNGMTPKGKV 840 DETCMQSREI WTGVTYAVAA NMLLHGMEHQ GFTTAEGIFI AGWSEEGYGY WFQTPEGWTT 900 DGHYRSLVYM RPLAIWAIQY AVSPPKAILE APKVNLMDRI HISPHMARAI SEISIRKIAP 960 DNRCFPSSAF HCEC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3408 | GDB1 | 2.0e-5 | 625 | 714 | 99 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
| COG4354 | COG4354 | 1.0e-27 | 102 | 462 | 376 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 2.0e-62 | 102 | 421 | 331 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 9.0e-70 | 556 | 918 | 381 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 9.0e-162 | 557 | 920 | 368 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL31035.1 | 0 | 1 | 974 | 1 | 967 | AC078948_19 unknown protein [Oryza sativa Japonica Group] |
| GenBank | EEC67156.1 | 0 | 1 | 974 | 1 | 974 | hypothetical protein OsI_34005 [Oryza sativa Indica Group] |
| GenBank | EEE51125.1 | 0 | 1 | 974 | 1 | 935 | hypothetical protein OsJ_31868 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064833.1 | 0 | 1 | 974 | 1 | 974 | Os10g0473400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002285674.1 | 0 | 1 | 974 | 1 | 978 | PREDICTED: similar to catalytic [Vitis vinifera] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT045992 | 339 | 623 | 961 | 0 |
| GO856558 | 338 | 631 | 968 | 0 |
| GO868913 | 330 | 541 | 870 | 0 |
| GT045437 | 318 | 117 | 434 | 0 |
| GT045437 | 29 | 429 | 457 | 0.00003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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