| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g019850.1 |
| Family | GH14 |
| Protein Properties | Length: 548 Molecular Weight: 59511 Isoelectric Point: 8.0393 |
| Chromosome | Chromosome/Scaffold: 1 Start: 21751511 End: 21753698 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 88 | 506 | 0 |
| FVMMPLDTVKKCGSALNRRKAVQASLSALKSAGVEGIMVDVWWGIAESDGPGRYNFAGYMELMEMARKAGLKVQAVMSFHQCGGNVGDSVNIPLPRWAVE EMEKDQDLCYTDQWGRRNYEYVSLGCDAMPVLKGRTPVECYTDFMRAFRDHFADYLGNTIVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCNDRHM RSSLKAAAEAAGKPEWGHGGPTDAGGYNNWPEDTLFFRADNGGWSTQYGDFFLSWYSQMLLEHGDRILSGATSVFGASSPVEVSVKVAGIHWHYGTRSHA PELTAGYYNTRHHDGYRPIADLLARHGAVLNFTCVEMRDHEQPQEAQCMPEHLVRQVGAAARAAGVGLAGENALPRYDGTAHDQVVATAAQRAAEDRMVA FTYLRMGPDLFHPDNWQRF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 548 Download |
| MAFNLAQCAT AAASVAPRTP RPARSAVAAS VSVSTRKAAD GRLRLQRQAS CEPSVAPSRS 60 VFCRAAVSGK SAADRAASTR RRSGVPVFVM MPLDTVKKCG SALNRRKAVQ ASLSALKSAG 120 VEGIMVDVWW GIAESDGPGR YNFAGYMELM EMARKAGLKV QAVMSFHQCG GNVGDSVNIP 180 LPRWAVEEME KDQDLCYTDQ WGRRNYEYVS LGCDAMPVLK GRTPVECYTD FMRAFRDHFA 240 DYLGNTIVEI QVGMGPAGEL RYPSYPESNG TWKFPGIGAF QCNDRHMRSS LKAAAEAAGK 300 PEWGHGGPTD AGGYNNWPED TLFFRADNGG WSTQYGDFFL SWYSQMLLEH GDRILSGATS 360 VFGASSPVEV SVKVAGIHWH YGTRSHAPEL TAGYYNTRHH DGYRPIADLL ARHGAVLNFT 420 CVEMRDHEQP QEAQCMPEHL VRQVGAAARA AGVGLAGENA LPRYDGTAHD QVVATAAQRA 480 AEDRMVAFTY LRMGPDLFHP DNWQRFAAFV RRMNGAGSCR EAAEREAHGV AQATGSLVHE 540 AAVALRS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02161 | PLN02161 | 4.0e-127 | 85 | 514 | 438 | + beta-amylase | ||
| PLN02905 | PLN02905 | 3.0e-127 | 85 | 515 | 438 | + beta-amylase | ||
| PLN02801 | PLN02801 | 3.0e-171 | 85 | 528 | 451 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 84 | 545 | 469 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 0 | 84 | 529 | 446 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY78842.1 | 0 | 43 | 547 | 41 | 536 | hypothetical protein OsI_33946 [Oryza sativa Indica Group] |
| GenBank | EAZ16360.1 | 0 | 43 | 547 | 41 | 535 | hypothetical protein OsJ_31822 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064798.1 | 0 | 43 | 547 | 41 | 535 | Os10g0465700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147532.1 | 0 | 1 | 547 | 1 | 544 | beta-amylase [Zea mays] |
| RefSeq | XP_002467119.1 | 0 | 1 | 547 | 1 | 547 | hypothetical protein SORBIDRAFT_01g019850 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 85 | 531 | 12 | 459 | A Chain A, Crystal Structure Of A Putative Alpha-Rhamnosidase From Bacteroides Thetaiotaomicron |
| PDB | 1q6c_A | 0 | 85 | 531 | 12 | 459 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 85 | 531 | 12 | 459 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1ukp_D | 0 | 85 | 536 | 12 | 464 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_C | 0 | 85 | 536 | 12 | 464 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO779314 | 408 | 145 | 545 | 0 |
| HO826564 | 405 | 142 | 543 | 0 |
| BU103692 | 435 | 84 | 518 | 0 |
| EG518392 | 308 | 100 | 407 | 0 |
| HO593646 | 443 | 107 | 542 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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