| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g020180.1 |
| Family | PL1 |
| Protein Properties | Length: 483 Molecular Weight: 51126.2 Isoelectric Point: 6.1824 |
| Chromosome | Chromosome/Scaffold: 1 Start: 22319921 End: 22323221 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 139 | 339 | 0 |
| WIVFASDMAIRLNEELLVNSYKTIDGRGARVHIGGGGACITLQYVSNVIIHNVHVHDCVPAGNANVRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALW RCADGLVDAIMGSTAITVSNSYFAHHDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEMYAIGGSANPTINSQGNRYI A | |||
| Full Sequence |
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| Protein Sequence Length: 483 Download |
| MARPPKTTGI AFSPPLGGTA AAPSELLFLK STLPEPAAVV AELDSKVAMS RRRMQEAGGA 60 SGGGGCLTGN PIDDCWRCSG TDWRQDRQRL ADCGIGFGRN ALGGKGGPVY VVTDSSDGDP 120 VNPVPGTLRH AAIQEGPLWI VFASDMAIRL NEELLVNSYK TIDGRGARVH IGGGGACITL 180 QYVSNVIIHN VHVHDCVPAG NANVRSSPTH YGWRTRSDGD GISLFGARDV WVDHCALWRC 240 ADGLVDAIMG STAITVSNSY FAHHDEVMLL GASDAYLPDS GMQVTIAFNR FGPGLVQRMP 300 RCRRGYFHIV NNDYTSWEMY AIGGSANPTI NSQGNRYIAP GDPNAKEVTK RVDTAEGQWN 360 GWNWRTEGDM MVNGAFFVPS GEGLEEIYDK ASSTDPKSSA LVDVLTQNAG VLGDPRNDAE 420 ETGYRGVNYA GVGTGGGGGN GYGYLGMVYA NGGGDRRSRS QSALSLISSV TTLIALGCLR 480 LL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-21 | 220 | 335 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-55 | 203 | 337 | 143 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-62 | 145 | 341 | 208 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAP54096.1 | 0 | 29 | 416 | 30 | 419 | pectate lyase 12 precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN31780.1 | 0 | 1 | 415 | 1 | 417 | unknown [Zea mays] |
| GenBank | EEC67092.1 | 0 | 29 | 482 | 30 | 491 | hypothetical protein OsI_33884 [Oryza sativa Indica Group] |
| RefSeq | NP_001147972.1 | 0 | 1 | 482 | 1 | 483 | pectate lyase 12 [Zea mays] |
| RefSeq | XP_002464529.1 | 0 | 1 | 482 | 1 | 482 | hypothetical protein SORBIDRAFT_01g020180 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 70 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 70 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 102 | 341 | 22 | 250 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.000000000000007 | 161 | 349 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 3krg_A | 0.000000000000009 | 161 | 349 | 130 | 337 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778688 | 396 | 21 | 416 | 0 |
| CK243724 | 328 | 28 | 353 | 0 |
| FG606120 | 346 | 33 | 378 | 0 |
| CK262438 | 321 | 81 | 401 | 0 |
| GT740031 | 303 | 82 | 383 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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